Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGGAGCCTACTTATGAAGACTGCTTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgttcagacatttgcttcaatttttaatgcaattactggaggtggcatcactcgaattttgtaaagttaaaattgtctacaaattttagaattattgaataatattatttcatttgttctttgaag

Basic information

species Zea mays
transcript GRMZM2G064023_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 11
GTTTTGGGAGCCTACTTATGAAGACTGCTTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgttcagacatttgcttcaatttttaatgcaattactggaggtggcatcactcgaattttgtaaagttaaaattgtctacaaattttagaattattgaataatattatttcatttgttctttgaag
||| ||||||||||| |||||||| ||||||||  |||| ||||| ||||||||||||||||| |||||||||||||||||||||||         ||| |       |  ||     |||||      |  |||     ||||||||||    || | |  |  | | |||  |  | | ||||                           
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAGgtagctttt---------tttaccaatgcatccaacatctttactttccaggcaatcctgtaaattttgtaactgcaatagtaacc-ctattttctggttcactgaag--------------------------

upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 11
GTTTTGGGAGCCTACTTATGAAGACTGCTTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgttcagacatttgcttcaatttttaatgcaattactggaggtggcatcactcgaattttgtaaagttaaaattgtctacaaattttagaattattgaataatattatttcatttgttctttgaag
||| ||||||||||| |||||||| ||||||||  |||| ||||| |||||| |||||||||| |||||||||||||||||||||||  |||     ||  ||||   | |       |||||         | ||  | |  | ||||||     |||| || ||      |  |||     ||||||    |||   | ||||| |||||
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagctttttatcaa----ttcattcaccatct-------ttact--------taccaggcaa--tctgtaaa-----aattttcaac------tgcaatagc--aataatgccgtttt-ctggttctctgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76287895|gb|DV027463.1|DV027463
EST:     TTAAACATGATTGCTCGGCTTTCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATGC
genomic: TTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttctttgaagAATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATGC
EST: gi|149082725|gb|EE171943.2|EE171943
EST:     TTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTTCA-GGGTGGGAAATCAATAGAAACTGACAATTCTCTGGGAT-AT
genomic: TTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttctttgaagAATTTT-CAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGG-ATTAT
EST: gi|71450120|gb|DR831170.1|DR831170
EST:     TAAACATGATTGCTCGGCTTCCCAC-AGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGGGTGGGAAATCAATAGAAACTGACCATTCTCTGGATTATG
genomic: TAAACATGATTGCTCGGCTTCC-ACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttctttgaagAATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATG
EST: gi|31361054|gb|CD445411.1|CD445411
EST:     TTAAACTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATGC
genomic: TTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttctttgaagAATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATGC
EST: gi|213174510|gb|FM184748.1|FM184748
EST:     TTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATGC
genomic: TTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttctttgaagAATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATGC
EST: gi|32859373|gb|CD999054.1|CD999054
EST:     TTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATGC
genomic: TTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttctttgaagAATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATGC
EST: gi|5915419|gb|AW053060.1|AW053060
EST:     TTAAACTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATGC
genomic: TTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttctttgaagAATTTTCAAGGGTGGGAAATCAATAGAAACTGACAATTCTCTGGATTATGC