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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgtttagaaatgtttcatttttaatgcacttactggtggtgacatcagtcaattttttcctgaactagttgtgtacagatgtttttttgaaacagctgcattcaaattttagaattaatgaattatattgtttcatttgttttttgaag

Basic information

species Zea mays
transcript GRMZM2G063851_T04
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 11
GTTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgtttagaaatgtttcatttttaatgcacttactggtggtgacatcagtcaattttttcctgaactagttgtgtacagatgtttttttgaaacagctgcattcaaattttagaattaatgaattatattgtttcatttgttttttgaag
||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||  ||||  ||     |  |    || | ||   |    | | |    |   | |   | ||    | |     || ||   ||||                                                          
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAGgtagctttt-tttaccaatgcatccaacatctttactttccaggcaatcctgtaaattttgtaactgcaatagtaaccctattttc-tggttcactgaag---------------------------------------------------------

upper sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 11
GTTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgtttagaaatgtttcatttttaatgcacttactggtggtgacatcagtcaattttttcctgaactagttgtgtacagatgtttttttgaaacagctgcattcaaattttagaattaatgaattatattgtttcatttgttttttgaag
||| ||||||||||| |||||||| |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||  | |  | |  ||||   |   |  ||||||  |  |  |  |     ||||||   ||| | |||   |      |||   ||||    | | | |  | ||                                            
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagctttttatca--attcattcaccatc--tttacttaccag--gcaatctgtaaaaattttcaactgcaatagcaata-----atgccgtttt----ctggttctctgaag-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211131287|gb|FL186946.1|FL186946
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAAGTTCTTTGGACTATG
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAA-TTCTTTGGACTATG
EST: gi|21480820|gb|BQ577503.1|BQ577503
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: gi|78179069|gb|DV549442.1|DV549442
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: gi|211131286|gb|FL186945.1|FL186945
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: gi|78109451|gb|DV527867.1|DV527867
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACTGGAG                         AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATTATTCTTTGGACTAT
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTAT
EST: gi|6964715|gb|AW433408.1|AW433408
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGAC-ATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: gi|76010585|gb|DT937755.1|DT937755
EST:     GTTTACCGGAG                         AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
genomic: GTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: gi|7238183|gb|AW573405.1|AW573405
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: gi|7145414|gb|AW506895.1|AW506895
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: gi|67040702|gb|CO466957.1|CO466957
EST:     TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG                         AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC