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CCGATAATTCTTTGGACTATGCGGCAAATTTCTCACACATGCTTGGTTTTGACGACCCAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgcatccatccttgtttgtacttttattatgtttcagaagtactcgttttcctctcatactgtgacctgtcacctgtgttcttctag
species | Zea mays |
transcript | GRMZM2G063851_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GACGACCAAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACAC TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGEST: gi|31364242|gb|CD448597.1|CD448597
genomic: GACGACCCAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgc ... gttcttctagTGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
EST: GGCTCTATGTAACAATTCACAC TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGEST: gi|6964715|gb|AW433408.1|AW433408
genomic: GGCTCTATGTAACAATTCACACgtaattttgc ... gttcttctagTGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
EST: GACGACCAAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACAC TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGEST: gi|76010585|gb|DT937755.1|DT937755
genomic: GACGACCCAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgc ... gttcttctagTGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
EST: GACGACCCAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACAC TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGEST: gi|7145414|gb|AW506895.1|AW506895
genomic: GACGACCCAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgc ... gttcttctagTGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
EST: GACGACCAAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACAC TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGEST: gi|116825307|gb|EC869024.1|EC869024
genomic: GACGACCCAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgc ... gttcttctagTGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
EST: GACGACCCAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACAC TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
genomic: GACGACCCAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgc ... gttcttctagTGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGATAATTCTTTGGACTATGCGGCAAATTTCTCACACATGCTTGGTTTTGACGACCCAAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgcatccatccttgtttgtacttttattatgtttcagaagtactcgttttcctctcatactgtgacctgtcacctgtgttcttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT