Sequence
atgc intronic sequence ATGC exonic sequenceTCATAATCCTTCACGTGGTTGCTCTTGTGTATTATATCAAAGGGCTTTTGACTCCTAGGCTGTTCAAAGTTGCTATGACTCTTGTCATATCTGTTGGCTTgtaagtctctgaagttgccaatcttttataatacacagggttaatatctttggacttcaaaaaattgaaaccagcaagaaccttgtctctgaatatcaatatctcaatatttatcatctcaatgtccaaatgctgatttcaacatccttcctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G060611_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os05g44360.1 (Oryza sativa), 5'ss of exon 11
TCATAATCCTTCACGTGGTTGCTCTTGTGTATTATATCAAAGGGCTTTTGACTCCTAGGCTGTTCAAAGTTGCTATGACTCTTGTCATATCTGTTGGCTTgtaagtctctgaagttgccaatcttttataatacacagggttaatatctttggacttcaaaaaattgaaaccagcaagaaccttgtctct----gaatatcaatatctcaata-tttatc---------atctcaatgtccaaatgctgatttcaacatccttcctgcag
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TCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTgtaagtctcttgctttttttattgtcaggtgcatgagaaactag-acattgagcttgtttattccttggaccaataatcaccatctatccatcagaatttaaacatttaatttctttatttgagatggtatcttaacccacatatgctaatggcaacatccttcctccag
upper sequence: GRMZM2G060611_T03 (Zea mays), 5'ss of exon 11
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 11
TCATAATCCTTCACGTGGTTGCTCTTGTGTATTATATCAAAGGGCTTTTGACTCCTAGGCTGTTCAAAGTTGCTATGACTCTTGTCATATCTGTTGGCTTgtaagtctctgaagttgccaatcttttataatacacagggttaatatctttggacttcaaaaaattgaaaccagcaagaaccttgtct--ctgaatatcaatatctcaatatttatcatctcaatgtccaaatgctgatttcaacatccttcctgcag
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TCATTATCATCCATGTGGTAGCTCTTGTGTATTATATCAAAGGAATTCTATCTCCAAAAATGTTTAAAGTAGCTGTTACGCTTGTTGTATCCGTTGGCCTgtaagcttcagttatcttctgt-ttctctatcatatgaattgactaattatgttggtaacagaaatatcaaaaactaatacttggtgcaactgaatgtcaa---------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211132443|gb|FL443447.1|FL443447EST: ACTCCTAGGCTGTTCAAAGTTGCTATGACTCTTGTCATATCTGTTGGCTT AGCTGTTTGTTTTGCAGTAGTAGCCATACTTGTTGCATTGGTGGCATCTAG
genomic: ACTCCTAGGCTGTTCAAAGTTGCTATGACTCTTGTCATATCTGTTGGCTTgtaagtctct ... cttcctgcagAGCTGTTTGTTTTGCAGTAGTAGCCATACTTGTTGCATTGGTGGCATCTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCATAATCCTTCACGTGGTTGCTCTTGTGTATTATATCAAAGGGCTTTTGACTCCTAGGCTGTTCAAAGTTGCTATGACTCTTGTCATATCTGTTGGCTTgtaagtctctgaagttgccaatcttttataatacacagggttaatatctttggacttcaaaaaattgaaaccagcaagaaccttgtctctgaatatcaatatctcaatatttatcatctcaatgtccaaatgctgatttcaacatccttcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT