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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtaccgtaaatataattgcattaaatttcttaaacactgatatgctgctagtgctatgtttcgagtgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag

Basic information

species Zea mays
transcript GRMZM2G058948_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os04g58620.1 (Oryza sativa), 5'ss of exon 12
TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtaccgtaaatataattgcattaaatttcttaaacactgatatgctgctagtgctatgtttcgagtgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag
|||||||||||| || |||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||  | ||||||||     |   |||  |  |     ||  |||| |||   | || ||| | ||||  ||  |   ||  || |  |||  |||                                                                                                  
TTTGGCTGGTCTATTGCTAGCAGAAACAGAATTCTCCTTACAGGTTGAGTCGGATATTGCTCCTTACCGTGGTCTTCTGTTAGGTCTTTTCTTTATGACGgtaaggactctgaatataatcatcattttttttgtctatgtcaatgagctgataggagtttgcttcaa-tgtttata--tggataatataacaatgtacatat------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtaccgtaaatataattgcattaaatttcttaaacactgatatgctgctagtgctatgtttcgagtgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag
 ||||||||| |  |||| |||||||| || || |||||||||||||| || ||||| ||||| |||||||| ||||| || || || ||||||||||||||  || ||| | ||  || | ||  |||| | ||||    |  | |  |  | || | ||||  | | | ||  ||  |||  |      | ||||   |                                                                                                  
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGtaggtgccgaatatcaaaattcac-aaatctattaattg-tattgttttatttgttc-atgtgacaaatattttta-ttttaaattgcggttatggttgtgttg----------------------------------------------------------------------------------------------

upper sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 11
TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtaccgtaaatataattgcattaaatttcttaaacac-tgatatgctgctagtgctatgtttcgagtgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag
|||||||||| |  |||| |||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| |||||  | || || ||||||||||||||  || |   | ||  || | ||  |  |  ||||      |  |||  |   | ||  |  | |    | ||    |||||||  ||  ||  ||  ||                                                                                                   
TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtttgtgcttaatattcaaattcaaaagttaacttagttgtattgtatatttaca-tgtaacatat-atatattttatactttgt--caatatgctgttcaatt------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 15
TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtaccgtaaatataattgcattaaatttcttaa--acactg----atatgctgctagtgctatgtttcgagtgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag
|||||||||| |  |||| |||||||| || || |||||||||||||| || ||||| |||||||||||||| ||||| || || || ||||||||||||||  || | | | ||  || | ||  |||||| ||||    | ||    || || |  |     | | |||  | ||    ||   ||||      ||                                                                                                           
TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggtgctgaatatcaaaattcac-aaatttattaattgtattgttttatttgtttgtgacatttttttttaattgcggttatggttgtgttgctatttc--------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 11
lower sequence: AT4G00630.2 (Arabidopsis thaliana), 5'ss of exon 11
TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtaccgtaaatataattgcattaaatttcttaaacactgatatgctgctagtgctatgtttcgag-tgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag
||||||||||||  |||| ||||| || || || ||||| || ||||| |||||||| ||||| || |||||||||||||| ||||| ||||| |||||||| | |   || ||     |  | | ||| |   | | |   |||| | |  || || | |  || ||| || ||  || ||  ||  |  |    ||  || ||  ||  ||                                                                                       
TTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTGGTCTTCTGTTGGGACTCTTCTTCATGACGgtaatt--tgtgaactaggt--cttgaaaatagctgatc---gataagtt--tactgttttccttggagatggtcagaagttattataaata----ggatattaaggaatata---------------------------------------------------------------------------------------

upper sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 11
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 12
TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgt-----gagtaccgtaaatataattgcattaaatttcttaaacactgatatgctgctagtgctatgtttcgagtgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag
||||||||||||  | || ||||| ||||| || || || || || || |||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||     ||||  | |||  |   ||     | | ||  | |   |||| | |      |  ||||   | ||        ||| || |||     |  | |  |  |  |  ||   ||| |||           |||   | |   | | |  || | ||||                                        
TTTGGCTGGTCTACTCCTTGCAGAGACAGAATTTTCGTTGCAAGTAGAATCAGATATTGCTCCATATCGTGGTCTTCTGTTGGGACTCTTCTTCATGACGgtaatatgagtttcctaataac--tttttccatagtttatcatttctgaaaagaatgaggaactatagatggaaaagga--aaccttttacttgtgttctag-taagatcctgatattgttgtcaactgtaagcaaactaacaaaaagagttccattgatttcag---------------------------------------

upper sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 10
TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtaccgtaaatataattgcattaaatttcttaaacactgatatgctgctagtgctatgtttcgagtgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag
|||||||||| || | || |||||||| || || |||||||||||||| |||||||| ||||| |||||||| ||| | || || || ||||| ||||||||  ||  | | |  ||         ||       |   | | ||    | |||    |||    |  || |   |  |||      | |    |||  |                                                                                                   
TTTGGCTGGTTTGCTTCTTGCAGAAACTGAATTTTCCTTACAGGTTGAATCAGATATTGCTCCATATCGTGGCCTTTTATTGGGTCTCTTCTTCATGACGgtaggt-tcttcaccatgccatttccaagagaggcatttatttatccaatcctaaca-tataaacctcgtttctattccttgaagttacctgtttggagaga-------------------------------------------------------------------------------------------------