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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttttccccttcagttgtgtgtttggagattttttccttctgacggcgagtaagatcagggcatttattcaagctatttaataaattagattat...

Basic information

species Zea mays
transcript GRMZM2G052546_T07
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052546_T04 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g01750.2 (Oryza sativa), 5'ss of exon 11
CTGACAGGATTATCCAAAAACACAATCACTTTGAAGTGGGAAGCTGATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttttccccttcagttgtgtgtttg--------gagattttttccttctgacggcgagtaagatcagggcatttattcaagctattt---aataaattagattat-----------------------------------------------------------------------------------------
|||||||| ||||| || ||  | ||||||||||||||||||  |||| ||| ||| |||||||||||||||||||| ||  | || ||||| ||||||   ||||   ||  |  | ||   | |         || |  |  |||    |  || |  |    | | |   ||| || |   || ||   | |  | ||||   |                                                                                         
CTGACAGGCTTATCAAAGAATTCCATCACTTTGAAGTGGGAAAGTGATAGTTGTTCTTCTGTTGAAATTTCTGGGCTTGATGTCGGGTGGGGACAGgtatgcttttgtgccaactatggtagatatattaatgtcgaaaactcatccactcggtggagttttttttaaagaacttttttaagtttactttccagtgtaatagaagctaactgtggtgttagcaccttttttttttttgcagaaggcattcttaattgatttcctgtttatgatttgcatttgttctgcttactcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67023551|gb|CO452300.1|CO452300
EST:     ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTTGACATTGGCTGGGGTCAG                         AGAATTCCTTTGACATATGACGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
genomic: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttt ... atcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
EST: gi|32833578|gb|CD973256.1|CD973256
EST:     ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG                         AGAATTCCTTTGACATATGATGAGGAGTAAGGAGCTTGGTTTCTTGAGAAA
genomic: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttt ... atcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
EST: gi|74234762|gb|DT642676.1|DT642676
EST:     ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG                         AGA-TTCCTTTTGACATATGATGA
genomic: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttt ... atcctttcagAGAATTCCTTT-GACATATGATGA
EST: gi|32833853|gb|CD973531.1|CD973531
EST:     ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG                         AGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
genomic: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttt ... atcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
EST: gi|33091895|gb|CF051889.1|CF051889
EST:     ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAG                         AGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA
genomic: ATGGTTCTTCCTCTGTTGAAATTTCTGGGCTCGACATTGGCTGGGGTCAGgtacattttt ... atcctttcagAGAATTCCTTTGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAA