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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAGCAAAGCGGGGCATGAGTGGCGAGCCTTTGCCGTCGCACAACCGGAGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaacaatttcccaagacccgcaggtgtcgttgcatcaaagcaacaagttccgaatcttttcgtctgccatcatgttaggaatctcacgctgttgc...

Basic information

species Zea mays
transcript GRMZM2G052476_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052476_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g55890.1 (Oryza sativa), 5'ss of exon 11
AGTGAGCAAAGCGGGGCATGAGTGGCGAGCCTTTGCCGTCGCACAACCGGAGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagc--aacaatttcccaagacccgcaggtgtcgttgcatcaaagcaacaagttccgaatcttttcgtctgccatcatgttaggaatctcacgctgttgc
|||| ||||||  ||||||| ||||| |||||||||||| |||||| | ||||||||||| |||||||||||||| || || ||||||||||||||||||||||||  |     ||  |   |   |  |   || |      |   | |    ||   ||        |    | |  | | | |   |  ||     |  
AGTGGGCAAAGTAGGGCATGTGTGGCAAGCCTTTGCCGTTGCACAATCAGAGCCTCTTTTACGCTTTGCGCTTTGTTCAGGAAGCCATTCTGATCCCGCGgtaagctcattgcgttttctcaaattggtgtcatcttcattgtacctcgatctattttaaactaaccaatgcttccttttatcaag--ccatacttgagtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211414328|gb|FL440235.1|FL440235
EST:     CGCTTTGCGCTTTGCTCCGGCAGCCATTYTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCMCCAGCTGGAGGCGGCCAAG
genomic: CGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... atgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
EST: gi|71430897|gb|DR811947.1|DR811947
EST:     AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
genomic: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... atgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
EST: gi|76281673|gb|DV021241.1|DV021241
EST:     AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
genomic: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... atgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
EST: gi|160481374|gb|EY254288.1|EY254288
EST:     AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
genomic: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... atgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
EST: gi|71761823|gb|DR959760.1|DR959760
EST:     AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTTTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG
genomic: AGCCTCTTTTGCGCTTTGCGCTTTGCTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... atgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAAG