1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCTGGGGTTACTTTGCCTACATGGCCATCGACAGTCTACCAGGGAATCAGTTCTGGGAGAGGATACAGCTTCTGTTCATTACAGAAAGCCGACGCTACAAgtaacatctctgtcccgcagcaattcacttcaaaatgaaggattgggctagcacgggcacaaatgcagagcctgtgtttcttctttgcgactaatcatccgattacgccgtggttgcag
species | Zea mays |
transcript | GRMZM2G051753_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTCTGGGAGAGGATACAGCTTCTGTTCATTACAGAAAGCCGACGCTACAA GGTTCTTGAAGGTCCCCATGCATCGTTTGTGGAGTCAGTGGTTCCCAAAACEST: gi|91876844|gb|EB406801.1|EB406801
genomic: TTCTGGGAGAGGATACAGCTTCTGTTCATTACAGAAAGCCGACGCTACAAgtaacatctc ... gtggttgcagGGTTCTTGAAGGTCCCCATGCATCGTTTGTGGAGTCAGTGGTTCCCAAAAC
EST: AAGCCGACGCTACAA GGTTCTTGAAGGTCCCCATGCATCGTTTGTGGAGTCAGTGGTTCCCAAAACEST: gi|67014544|gb|CO443293.1|CO443293
genomic: AAGCCGACGCTACAAgtaacatctc ... gtggttgcagGGTTCTTGAAGGTCCCCATGCATCGTTTGTGGAGTCAGTGGTTCCCAAAAC
EST: TTCTGGGAGAGGATACAGCTTCTGTTCATTACAGAAAGCCGACGCTACAA GGTTCTTGAAGGTCCCCATGCATCGTTTGTGGAGTCAGTGGTTCCCAAAAC
genomic: TTCTGGGAGAGGATACAGCTTCTGTTCATTACAGAAAGCCGACGCTACAAgtaacatctc ... gtggttgcagGGTTCTTGAAGGTCCCCATGCATCGTTTGTGGAGTCAGTGGTTCCCAAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGGGTTACTTTGCCTACATGGCCATCGACAGTCTACCAGGGAATCAGTTCTGGGAGAGGATACAGCTTCTGTTCATTACAGAAAGCCGACGCTACAAgtaacatctctgtcccgcagcaattcacttcaaaatgaaggattgggctagcacgggcacaaatgcagagcctgtgtttcttctttgcgactaatcatccgattacgccgtggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT