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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCATACAATCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAGgtaaattcaataaccgacaacattcatgttttacgcaagtacctgaatgatgtacggaaagtttgtatactaatatttccatggttcccctaactctttt...

Basic information

species Zea mays
transcript GRMZM2G051138_T01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78079476|gb|DV507888.1|DV507888
EST:     TCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAG                         GACCACATTCTGAAGGAAAGATTTGATTGTTCAAGGACGTGTGGTTTTTGC
genomic: TCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAGgtaaattcaa ... taaaatgcagGACCACATTCTGAAGGAAAGATTTGATTGTTCAAGGACGTGTGGTTTTTGC
EST: gi|6526840|gb|AW216109.1|AW216109
EST:     TCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAG                         GACCACATTCTGAAGGAAAGATTTGATTGTTCAAGGACGTGTGGTTTTTGC
genomic: TCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAGgtaaattcaa ... taaaatgcagGACCACATTCTGAAGGAAAGATTTGATTGTTCAAGGACGTGTGGTTTTTGC
EST: gi|91875851|gb|EB405808.1|EB405808
EST:     TCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAG                         GACCACATTCTGAAGGAAAGATTTGATTGTTCAAGGACGTGTGGTTTTTGC
genomic: TCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAGgtaaattcaa ... taaaatgcagGACCACATTCTGAAGGAAAGATTTGATTGTTCAAGGACGTGTGGTTTTTGC
EST: gi|78122197|gb|DV540581.1|DV540581
EST:     TCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAG                         GACCACATTCTGAAGGAAAGATTTGATTGCTCAAGGACGTGTGGTTTTTGC
genomic: TCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAGgtaaattcaa ... taaaatgcagGACCACATTCTGAAGGAAAGATTTGATTGTTCAAGGACGTGTGGTTTTTGC
EST: gi|6466789|gb|AW191449.1|AW191449
EST:     TCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAG                         GACCACATTCTGAAGGAAAGATTTGATTGTTCAAGGACGTGTGGTTTTTGC
genomic: TCCGGAGCCCGAGGCTCTGGCAAACTGATCAATCATCTCGATCCAATAAGgtaaattcaa ... taaaatgcagGACCACATTCTGAAGGAAAGATTTGATTGTTCAAGGACGTGTGGTTTTTGC