Sequence
atgc intronic sequence ATGC exonic sequenceACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCTgttagtagtattctactattgattagataactttctgtcctagaggtgtttcaatgtccctcctttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G050186_T06 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g35630.1 (Oryza sativa), 5'ss of exon 10
ACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCTgttagtagta---ttctactattga-----ttagataactttctgtcctagaggtgtttcaatgtccctcctttttcag--------------------------------------------------
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GCGGCAAGATTCTTCTATTGGCTTTGGGGCACCTGTCCGTGCTAACATGAGGGCAGGTGGCATCTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCAgtaagcaccaaaattccgagtttaacattttttggaaatctcctttgtttaaggagaatgcatgtgtgaattcagtgaaattactgtgtaaaaccttaaatctaggtgtttaaactgttcatttcttag
upper sequence: GRMZM2G050186_T06 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA09G28260.1 (Glycine max), 5'ss of exon 11
ACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCTgttagtagta--ttctactat-tgattagataactttctgtcctagaggtgttt--caatgtccctcctttttcag------------------------
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ACGACAAGATTCTTCTATTGGTTTTGGAGCCCCAGTTCGTGCAAATATGAGAGCTGTTGGAATAACAGATTCTGCAGTAACATCATCTTTACTTGAGTCAgtgagtgttggctcttattatctgaaatattaatctccttttttataattgtaaggccagatagatagatagatggatactgtaagcaattgaagattgt
upper sequence: GRMZM2G050186_T06 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 11
ACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCTgttagtagtat-tctactattgattagataactttctgtcctagaggtgt----ttcaatgtccctcctttttcag------------------------
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ACGACAAGATTCTTCTATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAGCTGGTGGAATAACAGATTCTGCAGTAACATCATCTTTACTTGAGTCAgtgagtgttgtctcttacatgaaatattaatctcctttttttataattgtaaggctagatagatagatggatactgtaagccattgaagcttgtaaataaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6918641|gb|AW400171.1|AW400171EST: GGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCT GTTGAGAGTGGTGATCTAATAGCTTATGGACTTATCCCAGAATTTATTGGA
genomic: GGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCTgttagtagta ... cctttttcagGTTGAGAGTGGTGATCTAATAGCTTATGGACTTATCCCAGAATTTATTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACGGCAGGATTCATCTATTGGTTTCGGCGCCCCAGTTCGTGCAAACATGAGGGCTGGTGGCATTTCAAGTGCTCAAGTGACATCATCCTTGTTGGAATCTgttagtagtattctactattgattagataactttctgtcctagaggtgtttcaatgtccctcctttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG