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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccagatatttgttttgttcagtattcacctgagacttgaagtttgtcatatgtttttcttatctctatctgaatgctag

Basic information

species Zea mays
transcript GRMZM2G048371_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048371_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os10g08550.5 (Oryza sativa), 5'ss of exon 10
GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccagatat--ttgttttgttcagtattcacctgag--acttgaagtttgtcat------atgttt----ttcttatctctatctga-atgctag
|| |||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||       | |  ||  ||| ||   |||    |||    | || | |||| | ||      | | ||     | || |  | | |||| ||| |||
GAAAACAAGGAGGGTCTTGAGCTCTTGAAGACTGCAATTGAAAAGGCTGGATACACTGGCAAGgtttgtgtactttgattaatttattgtttatctttctgcataagttaatgtttttgattgactgaggcttgagactttttttgcaacctgatatggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016579|gb|CO445328.1|CO445328
EST:     GACTTGAGCTCTTGAAA-CTGCAATTGAGAAGGCTGGATACACTGGCNAG                         GTTGTCATCGGAATGGATGTTGCTGCTTTCCGAGTTT
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTT-CGGAGTTT
EST: gi|67011307|gb|CO440056.1|CO440056
EST:     -ACTTGAGCTCTTGAAA-CTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCNGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|60358894|gb|DN225867.1|DN225867
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|211377302|gb|FL186755.1|FL186755
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGGAATGGATGTTGCTGCTTTCGGAAGTTT-ACAGTGACAAG
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGG-AATGGATGTTGCTGCTT-CGGA-GTTTTACAGTGACAAG
EST: gi|31360635|gb|CD444992.1|CD444992
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|60399892|gb|DN232702.1|DN232702
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|61118137|gb|DN559098.1|DN559098
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|211377303|gb|FL186756.1|FL186756
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAAATGGATG
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAA-TGGATG
EST: gi|31357253|gb|CD441610.1|CD441610
EST:     TGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: TGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|32826370|gb|CD966048.1|CD966048
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31355741|gb|CD440098.1|CD440098
EST:     GACTTGAGCTCTTGATTCCTGAAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|76294188|gb|DV033756.1|DV033756
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GGTGTCATCGGAATGGATGTTGCTGCT
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCT
EST: gi|211425250|gb|FL005768.1|FL005768
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31354997|gb|CD439354.1|CD439354
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAA                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31357159|gb|CD441516.1|CD441516
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|28931188|gb|CB334549.1|CB334549
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67026276|gb|CO455025.1|CO455025
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67023203|gb|CO451952.1|CO451952
EST:     ACTNGAGCTCTTGTAAACTGCA-TTGGAGAAGGCTGGAT-CACTGGCAAG                         GTTG-CATCCGAATGGATGGTGCTGCTTCGGAGTTT
genomic: ACTTGAGCTCTTGAAAACTGCAATTG-AGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTT
EST: gi|5268740|gb|AI770704.1|AI770704
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67011056|gb|CO439805.1|CO439805
EST:     GACTTGAGCTCTTGAAA-CTGCAATTGAGAAG-CTGG-TACACTGGCAAG                         GTTGTCATCNGAATGGATGTTGCTGCTTNCG-AGTTTTACAGTGACAAGGA
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTT-CGGAGTTTTACAGTGACAAGGA
EST: gi|31353433|gb|CD437790.1|CD437790
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31353535|gb|CD437892.1|CD437892
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67022401|gb|CO451150.1|CO451150
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31352214|gb|CD436571.1|CD436571
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|213179295|gb|FM184302.1|FM184302
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67018108|gb|CO446857.1|CO446857
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31361447|gb|CD445804.1|CD445804
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|111991147|gb|EE332203.1|EE332203
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|21987719|gb|BQ779247.1|BQ779247
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|60347267|gb|DN214240.1|DN214240
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|28187817|gb|CB179427.1|CB179427
EST:     CAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: CAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67022560|gb|CO451309.1|CO451309
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67011708|gb|CO440457.1|CO440457
EST:     GACTTGAGCTCTTGAAA-CTGCA-TTGAGAAG-CTGGAT-CACTGGCA-G                         GTTGTCATCGGA-TGGATGGTG-TGCTTCGGAGTTT-ACAGTGACAAG-AC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|8367282|gb|BE050227.1|BE050227
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACT-----G                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67030419|gb|CO459168.1|CO459168
EST:     ACTTGAGCTCTTGAAA-CTGCAATTGAGAAGGCTGGATACACTGGNCA-G                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGA
genomic: ACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGG-CAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGA
EST: gi|67010780|gb|CO439529.1|CO439529
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67040510|gb|CO466765.1|CO466765
EST:     CTTGAGCTCTTNGAAA-CTGNCA-TTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGGATGT-GCTGCTTCNGAGTTT-ACAGTGACANGGA
genomic: CTTGAGCTCTT-GAAAACTG-CAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGG-ATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGA
EST: gi|33093609|gb|CF053603.1|CF053603
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|60338715|gb|DN205688.1|DN205688
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|60398686|gb|DN231502.1|DN231502
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67021372|gb|CO450121.1|CO450121
EST:     GACTTGACCTCTTGGAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCT
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCT
EST: gi|14204058|gb|BG837735.1|BG837735
EST:     ACTTGGA-CTCTTGAAAACTGCAATTGAGAAGGCTGGATACATTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGMC
genomic: ACTT-GAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|33094991|gb|CF054985.1|CF054985
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|32915417|gb|CF020229.1|CF020229
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31351690|gb|CD436047.1|CD436047
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67015783|gb|CO444532.1|CO444532
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67022155|gb|CO450904.1|CO450904
EST:     ACTTGAGCTCTTGCAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: ACTTGAGCTCTTG-AAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31362206|gb|CD446563.1|CD446563
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67016494|gb|CO445243.1|CO445243
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67015750|gb|CO444499.1|CO444499
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67023954|gb|CO452703.1|CO452703
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|21843176|gb|BQ703742.1|BQ703742
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31349581|gb|CD433938.1|CD433938
EST:     ACTTGAGCTCTTGAAAACTGCAATTGAGAAAGCTGGATACACTNGGCA-G                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGA
genomic: ACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACT-GGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGA
EST: gi|14204206|gb|BG837883.1|BG837883
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|51592397|gb|CV071543.1|CV071543
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|211301118|gb|FL169206.1|FL169206
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31352118|gb|CD436475.1|CD436475
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGCCTGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|84980804|gb|DW531153.1|DW531153
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|31350995|gb|CD435352.1|CD435352
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|32864127|gb|CF003809.1|CF003809
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|211377301|gb|FL186754.1|FL186754
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
EST: gi|67038520|gb|CO464838.1|CO464838
EST:     GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAG                         GTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC
genomic: GACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccaga ... tgaatgctagGTTGTCATCGGAATGGATGTTGCTGCTTCGGAGTTTTACAGTGACAAGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAACAAGGAAGGACTTGAGCTCTTGAAAACTGCAATTGAGAAGGCTGGATACACTGGCAAGgttcaccagatatttgttttgttcagtattcacctgagacttgaagtttgtcatatgtttttcttatctctatctgaatgctag

- - - - - - - - - - - - - - - - - - - - - -  GCTGGA