1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTGCTAGTTGGGATACGAGGTTTGAGTTGGGAACAAAAACAGCTTTATTGTTGCCATTTTCTCCGATCGTTGTTGCAGCTGATGAAAATGAGCAAATAAGgtgaaatgatcattgcaattaaaaaccctagtacctgaaatacattgctgcagttgtgctgaagtttttctcatgccag
species | Zea mays |
transcript | GRMZM2G048067_T03 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTGCCATTTTCTCCGATCGTTGTTGCAGCTGATGAAAATGAGCAAATAAG AGTGTGGAACTACGACGATGCGCTGCCAGTGAACTCTTATCAAAACCATAAEST: gi|28576038|gb|CB281930.1|CB281930
genomic: TTGCCATTTTCTCCGATCGTTGTTGCAGCTGATGAAAATGAGCAAATAAGgtgaaatgat ... ctcatgccagAGTGTGGAACTACGACGATGCGCTGCCAGTGAACTCTTATCAAAACCATAA
EST: TTGCCATTTTCTCCGATCGTTGTTGCAGCTGATGAAAATGAGCAAATAAG AGGGTGGAACTACGACGATGCGCTGCCAGGGAACTCTTATCAAAACCATAAEST: gi|31558447|gb|CD527659.1|CD527659
genomic: TTGCCATTTTCTCCGATCGTTGTTGCAGCTGATGAAAATGAGCAAATAAGgtgaaatgat ... ctcatgccagAGTGTGGAACTACGACGATGCGCTGCCAGTGAACTCTTATCAAAACCATAA
EST: TTGCCATTTTCTCCGATCGTTGTTGCAGCTGATGAAAATGAGCAAATAAG AGTGTGGAACTACGACGATGCGCTGCCAGTGAACTCTTATCAAAACCATAA
genomic: TTGCCATTTTCTCCGATCGTTGTTGCAGCTGATGAAAATGAGCAAATAAGgtgaaatgat ... ctcatgccagAGTGTGGAACTACGACGATGCGCTGCCAGTGAACTCTTATCAAAACCATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTAGTTGGGATACGAGGTTTGAGTTGGGAACAAAAACAGCTTTATTGTTGCCATTTTCTCCGATCGTTGTTGCAGCTGATGAAAATGAGCAAATAAGgtgaaatgatcattgcaattaaaaaccctagtacctgaaatacattgctgcagttgtgctgaagtttttctcatgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT