1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CGAGGTGATGAAGGAGATTTGAGCAATGCATTTGCTGCTGAAATGGACAGAATTCCTGGTGTCAGgttattagtttcttggaaatgcttacttctattagtttctgatcttataagtaatcaaatgattaccttaccccaaggattaaacatttacataaattttattagttatctgctggatgtggtccttccaccttacag
species | Zea mays |
transcript | GRMZM2G047894_T03 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATTTGAGCAATGCATTTGCTGCTGAAATGGACAGAATTCCTGGTGTCAG GTATATACATTTTGATTTCCATCATGTTTGTCGTGGAGGTAACTTTGACAAEST: gi|71311517|gb|DR792122.1|DR792122
genomic: GATTTGAGCAATGCATTTGCTGCTGAAATGGACAGAATTCCTGGTGTCAGgttattagtt ... caccttacagGTATATACATTTTGATTTCCATCATGTTTGTCGTGGAGGTAACTTTGACAA
EST: GATTTGAGCAATGCATTTGCTGCTGAAATGGACAGAATTCCTGGTGTCAG GTATATACATTTTGATTTCCATCATGTTTGTCGTGGAGGTAACTTTGACAAEST: gi|40335862|gb|CK369932.1|CK369932
genomic: GATTTGAGCAATGCATTTGCTGCTGAAATGGACAGAATTCCTGGTGTCAGgttattagtt ... caccttacagGTATATACATTTTGATTTCCATCATGTTTGTCGTGGAGGTAACTTTGACAA
EST: GATTTGAGCAATGCATTTGCTGCTGAAATGGACAGAATTCCTGGTGTCAG GTATATACATTTTGATTTCCATCATGTTTGTCGTGGAGGTAACTTTGACAAEST: gi|60343346|gb|DN210319.1|DN210319
genomic: GATTTGAGCAATGCATTTGCTGCTGAAATGGACAGAATTCCTGGTGTCAGgttattagtt ... caccttacagGTATATACATTTTGATTTCCATCATGTTTGTCGTGGAGGTAACTTTGACAA
EST: ATGGACAGAATTCCTGGTGTCAG GTATATACATTTTGATTTCCATCATGTTTGTCGTGGAGGTAACTTTGACAA
genomic: ATGGACAGAATTCCTGGTGTCAGgttattagtt ... caccttacagGTATATACATTTTGATTTCCATCATGTTTGTCGTGGAGGTAACTTTGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGTGATGAAGGAGATTTGAGCAATGCATTTGCTGCTGAAATGGACAGAATTCCTGGTGTCAGgttattagtttcttggaaatgcttacttctattagtttctgatcttataagtaatcaaatgattaccttaccccaaggattaaacatttacataaattttattagttatctgctggatgtggtccttccaccttacag
- - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - GCTGCT