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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttgtctagtttgcctctgccttctctccaaaatgccgtcgccagtcaggccttgagcgatagagtaggcaaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcag

Basic information

species Zea mays
transcript GRMZM2G044629_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044629_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 5'ss of exon 12
ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttgtctagtttgcctctgccttctctccaaaatgccgtcgccagtcaggccttgagcgatagagtaggcaaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcag
|| ||| |||| ||||||||| |||| || ||||| ||||| ||||||||||||||||||||||||  ||||||| |      | |    |||  ||   ||  ||  || || |  | |||     ||     |    | |  ||   ||   |||  | ||   |    ||| ||                     
ATTTGCTTGCATATGTTCACTTTGGATTTTTTGAATCAAGTAGCAAACAGCCTTGAGAAGGACAGTACgtgagtgct------tctataactgttttaagtctgaa--gcagtaggaattca--ttgtgtttactttctttgcaaattacagtagtt--atctattttctcgttatgccc------------------

upper sequence: GRMZM2G044629_T03 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 13
ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAG--TGTgtgagtgttgtctagtttgcctctgccttctctccaaaatgcc-gtcgccagtcaggccttgagcgatagagtaggcaaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcag
 ||||| | ||||||||||||||||| ||  ||||||||||||||||  ||||||| || |||||  ||| || |||||| ||  ||  |  |  ||||||  ||  | |    |||  |  ||  || |       |    |      |  |  |      |  | |                                 
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgttgccttcttaactccaaccttctgcccccattatttgtcctccatcttgcttcttattgttttctgaattccaactgcgaagacatttac---------------------------------

upper sequence: GRMZM2G044629_T03 (Zea mays), 5'ss of exon 11
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttgtctagtttgcctctgccttctctccaaaatgccgtcgccagtcaggccttgagcgatagagtaggcaaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcag
 | ||| | || ||||| |||||||| ||  ||||||||||||||||  |||||||||| |||||  ||| |||  | |     ||  |  | | | || | |    || |     |  |     |   |   |      |    |   |   | |   |    ||| | |                           
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttc----tgtctctttcttttgaaaccacattcaagacccacaggattacccatttaacattgacctaaaat--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149100895|gb|EE186990.2|EE186990
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|71429564|gb|DR810614.1|DR810614
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATCCCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|211094109|gb|FL460556.1|FL460556
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTCCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|37378055|gb|CF625683.1|CF625683
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACATTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|211406602|gb|FL094198.1|FL094198
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|78115802|gb|DV534190.1|DV534190
EST:     GGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: GGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|94477176|gb|EB706134.1|EB706134
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|211119105|gb|FL479440.1|FL479440
EST:     ACTYTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGMCAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|91052248|gb|EB162666.1|EB162666
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|24769018|gb|CA404147.1|CA404147
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|32863501|gb|CF003183.1|CF003183
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|71772484|gb|DR970416.1|DR970416
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
EST: gi|16926697|gb|BM079765.1|BM079765
EST:     ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGT                         ATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG
genomic: ACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttg ... ttgtgagcagATACCATCTAGCTGAGAAGAAGATCCCTTCCATCCATGGGTTCACGACGGG