1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATATTTATGGACATGGCAGTTCTTGTCGAGGCTCAAGGAGACATGATCAACAACATCGAGACACATgtaagagttctctatttctgcattgagcctgttgtatgtaggacaagaaccatgtttcaataaattaattaatagcgagcttgatgagatcactcacatgtcgatttccatcctctttttcaag
species | Zea mays |
transcript | GRMZM2G044527_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAGTTCTTGTCGAGGCTCAAGGAGACATGATCAACAACATCGAGACACAT GTCTCGAATGCCACCAACCACATACAACAAGGCGTGAGCGCGCTCCAGAACEST: gi|78119539|gb|DV537923.1|DV537923
genomic: CAGTTCTTGTCGAGGCTCAAGGAGACATGATCAACAACATCGAGACACATgtaagagttc ... ctttttcaagGTCTCGAATGCCACCAACCACATACAACAAGGCGTGAGCGCGCTCCAGAAC
EST: CAGTTCTTGTCGAGGCTCAAGGAGACATGATCAACAACATCGAGACACAT GTCTCGAATGCCACCAACCACATACAACAAGGCGTGAGCGCGCTCCAGAACEST: gi|101400235|gb|EB821938.1|EB821938
genomic: CAGTTCTTGTCGAGGCTCAAGGAGACATGATCAACAACATCGAGACACATgtaagagttc ... ctttttcaagGTCTCGAATGCCACCAACCACATACAACAAGGCGTGAGCGCGCTCCAGAAC
EST: CAGTTCTTGTCGAGGCTCAAGGAGACATGATCAACAACATCGAGACACAT GTCTCGAATGCCACCAACCACATACAACAAGGCGTGAGCGCGCTCCAGAACEST: gi|148932260|gb|EC875796.2|EC875796
genomic: CAGTTCTTGTCGAGGCTCAAGGAGACATGATCAACAACATCGAGACACATgtaagagttc ... ctttttcaagGTCTCGAATGCCACCAACCACATACAACAAGGCGTGAGCGCGCTCCAGAAC
EST: AGTTCTTGTCGAGGGCTCA-GGAGACATGATCAACAACATCGAGACACAT GTCTCGAATGGCACCCACCACATACAACAAGGGCGTGAGCGCGCTCCAGAA
genomic: AGTTCTTGTCGAGG-CTCAAGGAGACATGATCAACAACATCGAGACACATgtaagagttc ... ctttttcaagGTCTCGAATGCCACCAACCACATACAACAAGG-CGTGAGCGCGCTCCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTTATGGACATGGCAGTTCTTGTCGAGGCTCAAGGAGACATGATCAACAACATCGAGACACATgtaagagttctctatttctgcattgagcctgttgtatgtaggacaagaaccatgtttcaataaattaattaatagcgagcttgatgagatcactcacatgtcgatttccatcctctttttcaag
- - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - AGGAGA