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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATGCAAAGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgcataatcctttgatgccattttgaacattataattgggcttctaagttttaataaacaatttggcttatctgaaaagttaaaactttagtctgtactatatagctccttcctatattttcatgaatatgacataatgtttaatgtgccttcttctgtgcag

Basic information

species Zea mays
transcript GRMZM2G044237_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044237_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 5'ss of exon 12
GTAATGCAAAGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgcataa--------tcctttgatgccattttga---------acattataattgggctt------ctaagttttaataaacaatttggcttatctgaaaagt-taaaactttagtctgtactatat--agctccttcctatattttcatgaatatgacataa-tgtttaatgtgcct-tcttctgtgcag
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||         ||  ||    ||||    |          |||| |  ||  || |       | |  ||| ||| |||| |||  |||||||  || |     | |  | | |  |  ||||  |  | | |    || |||| |   | ||||| ||   | ||| |||||  |   || || ||
GTAATGCAAGGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGTCTAATTGAGgttaagcgcttagcatttcattcacttcgcaccatcagcatagtatgctgcattttcttttagcatgatgacttgacgtttgatatacaaattgagttatctggcaactgctgcattcaattattcatcatatcaaatttcctttcttaatttcttcggtgtgacacaagcttctaaagtgcccattccctttgtag

upper sequence: GRMZM2G044237_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 12
GTAATGCAAAGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgcataatcctttgatgccattttgaacattataattgggcttctaagttttaataaaca-atttggcttatctgaaaagttaaaactttagtctgtactatatagctccttcctatattttcatgaatatgacataatgtttaatgtgccttcttctgtgcag
||||||||| ||||||| ||||| ||||| |||||||| || ||||||||||||||  |||||||          ||  |||  || ||    | | |     ||| |  |  | | | || ||  |     |||  || | | | ||   || |  ||| ||    ||  | || || |                                                     
GTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGAGAAGGTGCAACATGCCTCGTTGAGgt----------atttttttgtgtcaa---ggataaggatatttgcatcatgactgttgatttatgtgattgtgttcttttataatccaata--ttaatc----ctccacagttcttgt---------------------------------------------------

upper sequence: GRMZM2G044237_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA13G19450.1 (Glycine max), 5'ss of exon 13
GTAATGCAAAGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgcataatcctttgatgccattttgaacattataattgggcttctaagttttaataaacaatttggcttatctgaaaagttaaaactttagtctgtactatatagctccttcctatattttcatgaatatgacataatgtttaatgtgccttcttctgtgcag
||||||||| ||||||| ||||| ||||| |||||||| || || |||||||||||  |||||||          ||  |||  || ||    | | |     ||| |  |  | | | || ||     || || ||  | |   |  ||  ||  ||| ||    ||  | ||  | |                                                     
GTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGGGAAGGAGCAACATGCCTCGTTGAGgt----------atttttttgtgtcaa---ggataaggatatttgcatcatgactgttgat---ttatgtgactgttgttttatattccaatattaatc----ctccacagtccttgtgc-------------------------------------------------

upper sequence: GRMZM2G044237_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 13
GTAATGCAAAGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgcataatcctttgatgccattttgaacattataattgggcttctaagttttaa--taaacaatttggcttatctgaaaagttaaaactttagtctgtactatatagctccttcctatattttcatgaatatgacataatgtttaatgtgccttcttctgtgcag
||||||||  ||||||||||||| |||||||||||||| || || ||||||||||||||||||||    ||  |  | | || |   |||     || | || |        | |  ||  ||  |  || ||||  |  |||    ||   |||   | |     |                                                                   
GTAATGCAGGGTCTTGCAAAATCAATAGCATGGGATGGAGAAGGAGCAACATGCCTAATTGAGgt---atgagtcttacattaaaagcatgc-atacttaatgagcctaacccaatattgcaaatttgaccatttttccaatcatgcaaaccaaatagtgaacaaat-------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934567|gb|CF039379.1|CF039379
EST:     TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG                         GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: gi|32835096|gb|CD974774.1|CD974774
EST:     TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG                         GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: gi|78092274|gb|DV520648.1|DV520648
EST:     TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG                         GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: gi|148938789|gb|EC883127.2|EC883127
EST:     TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG                         GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: gi|32928445|gb|CF033257.1|CF033257
EST:     TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG                         GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: gi|76917242|gb|DV166726.1|DV166726
EST:     TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG                         GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: gi|211349360|gb|FL434476.1|FL434476
EST:     TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG                         GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: gi|32833027|gb|CD972705.1|CD972705
EST:     TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG                         GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
EST: gi|78027443|gb|DV495830.1|DV495830
EST:     TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAG                         GTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT
genomic: TTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGCCTAATTGAGgttaagtgca ... ttctgtgcagGTTACTGTAAGTGGCGCCAACAACGAGGCAGAAGCTGCTAAAATTGCTCGT