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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATGGTCTTATTAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatccatctgaattttaacttttgttactacacagtgagctacctacccaacctgtgtttttctattatatgcattctcctggactgagttgggtctcatctttctgctaaatggctgtaactggtgctgcag

Basic information

species Zea mays
transcript GRMZM2G044027_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 10
------------------------------------GTTGATGGTCTTATTAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatc-catctgaatt---ttaacttttgttactacacagtgagctac-ctacccaacctgtgtttttctattatatgcattctcctggactgagttgggtctcatctttctgctaaatggctgtaac---tggtgctgcag
                                    ||| ||||||||||||  |||||||| ||  |||||||||| || ||||| ||||| |||||||||| | |  | |||| |||   || | |||| |    |    || | ||   ||| | | |||||| |     || | ||  ||| ||  |                  |||    ||||||||   |||    | ||| || ||
TTGCATCACATCATCACTGGTACCATTTTAATGCAGGTTAATGGTCTTATTAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttacctctgcattcgtttgatttttctctacatgtggtaatctgtactagcaatcctgtggta----atgaaattgattttcacgt----------------ccttgtcactaaatggtcataatatattgtgttgtag

upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g16980.2 (Oryza sativa), 5'ss of exon 10
GTTGATGGTCTTATTAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatc-catctgaat---tttaacttttgttactacacagtgagctac-ctacccaacctgtgtttttctattatatgcattctcctggactgagttgggtctcatctttctgctaaatggctgtaac---tggtgctgcag
||| ||||||||||||  |||||||| ||  |||||||||| || ||||| ||||| |||||||||| | |  | |||| ||   ||| | |||| |    |    || | ||   ||| | | |||||| |     || | ||  ||| ||  |                  |||    ||||||||   |||    | ||| || ||
GTTAATGGTCTTATTAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGgtagatttacctctgcattcgtttgatttttctctacatgtggtaatctgtactagcaatcctgtggta----atgaaattgattttcacgt----------------ccttgtcactaaatggtcataatatattgtgttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32841175|gb|CD980856.1|CD980856
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCCGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|14206834|gb|BG840512.1|BG840512
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32909997|gb|CF014809.1|CF014809
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32841101|gb|CD980782.1|CD980782
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGA
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGA
EST: gi|7216734|gb|AW562856.1|AW562856
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|211032180|gb|FL277400.1|FL277400
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32850262|gb|CD989943.1|CD989943
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32850632|gb|CD990313.1|CD990313
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCT
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCT
EST: gi|32850554|gb|CD990235.1|CD990235
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|166541132|gb|EG308414.1|EG308414
EST:     GATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: GATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32866186|gb|CF005868.1|CF005868
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAACTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|32850616|gb|CD990297.1|CD990297
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGG
EST: gi|32840626|gb|CD980307.1|CD980307
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGGGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|67013235|gb|CO441984.1|CO441984
EST:     TAGGCTGATGAACGGAAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAANGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAA-GGAG
EST: gi|213192508|gb|FM182601.1|FM182601
EST:     TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: TAGACTGATGAATGGAAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|166419250|gb|EG304902.1|EG304902
EST:     AACACTGGACCGATTAACTT-GGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: AACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
EST: gi|166457737|gb|EG161293.1|EG161293
EST:     AAACAACACTGGACCGATTAACTTGGGGAACCCAG                         GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG
genomic: AAACAACACTGGGCCGATTAACTTGGGGAACCCAGgtaaaatcca ... ggtgctgcagGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG