Sequence
atgc intronic sequence ATGC exonic sequenceGAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgttggtgcatggagcctcactgcgggcctgtttggccacaatgtttatcaaaccatggttatacaatactatacttcacaattgtcatgacaataccata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g27230.3 (Oryza sativa), 5'ss of exon 11
GAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgttggtgcatggagcc-tcactgcgggcctgtttggccacaatgtttatcaaaccatggttatacaatactatacttcaca-----attgtcatgaca-ataccata----------------------------
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GAGCACCAGCGGAGGAGGATGGACCCTGCAACAAATGAACCACTTTTCACAAACTGCACACGAGATTTCACTGGAACGGTTGATTACATATTTTACACAGgtcagttcctggaccagtttatatctgtatgctttgatattataattttgtagcttcagtaaacatcttttaaggattacacagctagtgtcatgaaacatttaatgatggcccacacttgctttcgtatttcag
upper sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA09G15980.2 (Glycine max), 5'ss of exon 10
GAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgttggtgcatggagcctcactgcgggcctgtttggccacaatgtttat---caaaccatggttatacaatactatacttcacaattgtcatgacaataccata
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GAGCAGCATAAAAGGAGACTGGATGGTGGAACGAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgt--gagcatggtgttatatc----attttgataaacataatatctgtatcttgttcacaattttatgaagagatatgac----ttgtggtttcag-------
upper sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA19G39210.3 (Glycine max), 5'ss of exon 10
GAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgt-tggtg-catggagcctcactgcgggcctgtttggccacaatgtttatcaaaccatggttatacaatactatacttcacaattgtcatgacaataccata
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GAGCAGCATAAACGGAGACTAGATGACACAACAAATGAACCTTTATTCACAAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGgtgtgatatcttgcaatgttatgtc--attaatttgaataatttaacatcctgatcacttgtttatgaagtgatatcttgtg-ttttcag------------
upper sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA03G36550.1 (Glycine max), 5'ss of exon 10
GAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgttggtgcatggagcctcactgcgggcctgtttggccacaatgtttatca-aacca--tggttatacaatactatacttcacaattgtcatgacaataccata
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GAGCAGCATAAAGGGAGACTAGACAATGCAACAAATGAACCTTTATTCACAAATGTAACGAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGgt-gtgatatcttgcaatgttatgtcattaatttgataaatttaacatcctgatcaattgtttatgaagtgataccttttgtg-ttttcag------------
upper sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 10
GAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgttggtgcatggagcctcactgcg--ggcctgtttggccacaatgtttatcaaaccatggttatacaatactatacttcacaattgtcatgacaataccata
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GAGCAGCATAAAAGGAGAATGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgt--gagcatggtgttatatcattttgataaacttaatatctgtatct-tggtcacatttttatgaaaagatatgacttgtggtt-tcag------------
upper sequence: GRMZM2G043509_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 5'ss of exon 10
GAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgttgg-tgcatggagcctcactgcgggcctgtttggccacaatgtttatcaaac-catggtt-ataca-atactatacttcacaattgtcatg-acaataccata-----------------------
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GAGCAACAGAGGAGAAGGTTGGACCCCTCAACAAATGAACCTTTATTTACACATTGCACTAGAGATTTTATTGGCACCCTTGATTACATATTTTATACAGgtaatctttttcctacatgtcggtttgcatctttttcctatattttatttacacatgtgcttcatacttgtagtttgtgccgttattgatgtttaggattctctaataaataagatttgtggttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32807360|gb|CD959594.1|CD959594EST: AAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAG CGGACTCCCTGACAGTGGATTCGTTATTGGAACTTTTGGATGAGGAAAGTT
genomic: AAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgttggtgcat ... tctccttcagCGGACTCCTTGACAGTGGATTCATTATTGGAACTTTTGGATGAGGAAAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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GAGCATCAGCGGAGAAGGACAGACCCTGCAACAAATGAACCACTCTTCACAAATTGCACAAGAGATTTTACTGGAACTGTTGATTACATATTTTACACAGgttggtgcatggagcctcactgcgggcctgtttggccacaatgtttatcaaaccatggttatacaatactatacttcacaattgtcatgacaataccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA