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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgttttttatttcttctaaactacagccttgtgctgtcagatctcattttccctgggagtccagtcgttgtcttattctttagtaattctctgttcag

Basic information

species Zea mays
transcript GRMZM2G043198_T03
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211087670|gb|FL396337.1|FL396337
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|211325794|gb|FL399616.1|FL399616
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|6056687|gb|AW091092.1|AW091092
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|60352148|gb|DN219121.1|DN219121
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|32801932|gb|CD954168.1|CD954168
EST:     GCCGCAGATAAACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
EST: gi|32829371|gb|CD969049.1|CD969049
EST:     AAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: AAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|148928998|gb|EC874173.2|EC874173
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|32788226|gb|CD940462.1|CD940462
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGGTGGATAGAGCTACTATTA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
EST: gi|76282095|gb|DV021663.1|DV021663
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|67038743|gb|CO464998.1|CO464998
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|60396979|gb|DN229798.1|DN229798
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|463331|gb|T18298.1|T18298
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|15082843|gb|BI389527.1|BI389527
EST:     TGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: TGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|32801690|gb|CD953926.1|CD953926
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
EST: gi|6031329|gb|AW076186.1|AW076186
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|32802072|gb|CD954308.1|CD954308
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTA
EST: gi|60672217|gb|DN474985.1|DN474985
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|14206753|gb|BG840431.1|BG840431
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|211231538|gb|FL370980.1|FL370980
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|211275651|gb|FL423569.1|FL423569
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAR                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTAC
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTAC
EST: gi|211126332|gb|FL371833.1|FL371833
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|6828052|gb|AW331695.1|AW331695
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|60340970|gb|DN207943.1|DN207943
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|5566870|gb|AI881781.1|AI881781
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
EST: gi|44900498|gb|CK827043.1|CK827043
EST:     GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG                         GTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA
genomic: GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgtt ... ctctgttcagGTAATCAATCTTCGCTCAATTAGACCGCTGGATAGAGCTACTATTAATGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGgtaatttgttttttatttcttctaaactacagccttgtgctgtcagatctcattttccctgggagtccagtcgttgtcttattctttagtaattctctgttcag

-  GCTGAT
- - - - - - - - - AAGGAA