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ACCTGTATATTCGCAACATGCATATTCCCACCCCCAACCTGTGAAAGCTTCAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaaaatgtctactgtagacttgggtagtcattcatattctgcattcctagtctgttaacatgtccattacttctccattaacatcagtttgttttctctgtgagcag
species | Zea mays |
transcript | GRMZM2G043056_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATG CCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTAEST: gi|60358393|gb|DN225366.1|DN225366
genomic: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaa ... ctgtgagcagCCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATG CCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTAEST: gi|60357017|gb|DN223990.1|DN223990
genomic: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaa ... ctgtgagcagCCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATG CCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTAEST: gi|60355844|gb|DN222817.1|DN222817
genomic: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaa ... ctgtgagcagCCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATG CCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTAEST: gi|60338909|gb|DN205882.1|DN205882
genomic: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaa ... ctgtgagcagCCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATG CCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTAEST: gi|31355485|gb|CD439842.1|CD439842
genomic: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaa ... ctgtgagcagCCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATG CCCCCATCTGGAACACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTAEST: gi|78115032|gb|DV533420.1|DV533420
genomic: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaa ... ctgtgagcagCCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATG CCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTAEST: gi|211019067|gb|FL469808.1|FL469808
genomic: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaa ... ctgtgagcagCCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATG CCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTAEST: gi|5566802|gb|AI881668.1|AI881668
genomic: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaa ... ctgtgagcagCCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATG CCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTAEST: gi|31361667|gb|CD446024.1|CD446024
genomic: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaa ... ctgtgagcagCCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
EST: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATG CCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
genomic: CAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaa ... ctgtgagcagCCCCCATCTGGACCACCAGGAGTATTAGCAGGCCCAGCTCCCCAAACCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTGTATATTCGCAACATGCATATTCCCACCCCCAACCTGTGAAAGCTTCAAACCCTTTTGATCTTGGGAATGGGCCAGCTCCAACTCAAGCTCACATGgtataactaaaatgtctactgtagacttgggtagtcattcatattctgcattcctagtctgttaacatgtccattacttctccattaacatcagtttgttttctctgtgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA