1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTGCAACATTGTCGTTTATCTCCGAGACTTTTCTGTTTCTTTATGTTGGTATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAAACTTATAGgcatactctctccctctttctctctcttcattgctcaactagaagatctttcttctgaatctgtattttctatcatgtgcag
species | Zea mays |
transcript | GRMZM2G037342_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTATCTCCGAGACTTTTCTGTTTCTTTATGTTGGTATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAAACTTATAGEST: gi|87152007|gb|DY396796.1|DY396796
genomic: ATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAAACTTATAGgcatactctc ... tcatgtgcagCCCGGTAAAGT
EST: CTGTTTCTTTATGTTGGTATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAAACTTATAGEST: gi|19058280|gb|BM736947.1|BM736947
genomic: ATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAAACTTATAGgcatactctc ... tcatgtgcagC
EST: GATATAGAGAAGTGGAAGATTGTCGGTCAAACTTATAG CCCGGTAAAGTCTATCGCTTTGAGCAGCACCATTTTAGCCTTGGTGCTGGTEST: gi|20300776|gb|BQ163719.1|BQ163719
genomic: GATATAGAGAAGTGGAAGATTGTCGGTCAAACTTATAGgcatactctc ... tcatgtgcagCCCGGTAAAGTCTATCGCTTTGAGCAGCACCATTTTAGCCTTGGTGCTGGT
EST: ATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAAACTTATAG CCCGGTAAAGTCTATCGCTTTGAGCAGCACCATTTTAGCCTTGGTGCTGGT
genomic: ATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAAACTTATAGgcatactctc ... tcatgtgcagCCCGGTAAAGTCTATCGCTTTGAGCAGCACCATTTTAGCCTTGGTGCTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCAACATTGTCGTTTATCTCCGAGACTTTTCTGTTTCTTTATGTTGGTATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAAACTTATAGgcatactctctccctctttctctctcttcattgctcaactagaagatctttcttctgaatctgtattttctatcatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA