1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAACATACTAGGTCAACTGGCAGCTGCTGTGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctcttttataacttattgtgttatttgcagttcatcttaaatattccttttgtcttgacctatgtgtttccagataatttgctcatgtttgcat...
species | Zea mays |
transcript | GRMZM2G035417_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|5739686|gb|AI947481.1|AI947481
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCCCAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|28983432|gb|BQ538616.2|BQ538616
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|29130583|gb|CB381287.1|CB381287
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|60354372|gb|DN221345.1|DN221345
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|120480604|gb|EH210908.1|EH210908
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGA-TGGGGEST: gi|93283697|gb|EB675961.1|EB675961
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGG
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|17929739|gb|BM266651.1|BM266651
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|89763928|gb|DY690916.1|DY690916
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|18173452|gb|BM348840.1|BM348840
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: GACAGTTACCCCAGAGGAACGGTAGACTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|5468863|gb|AI834654.1|AI834654
genomic: GACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|28984929|gb|BQ539309.2|BQ539309
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|60353833|gb|DN220806.1|DN220806
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|78024018|gb|DV492405.1|DV492405
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|60339492|gb|DN206465.1|DN206465
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|78121957|gb|DV540341.1|DV540341
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|18167512|gb|BM337351.1|BM337351
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|24767328|gb|CA402472.1|CA402472
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|60353847|gb|DN220820.1|DN220820
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|16925169|gb|BM078237.1|BM078237
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|5847201|gb|AW000280.1|AW000280
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|5325104|gb|AI783295.1|AI783295
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGEST: gi|5152838|gb|AI759136.1|AI759136
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAG
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|60347941|gb|DN214914.1|DN214914
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAAGGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|211377507|gb|FL195230.1|FL195230
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATEST: gi|18179525|gb|BM380735.1|BM380735
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAAT
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|211092608|gb|FL283417.1|FL283417
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: GCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|12969776|gb|BG266651.1|BG266651
genomic: GCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAGCGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAGCCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|7227769|gb|AW566410.1|AW566410
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|16377325|gb|BI991866.1|BI991866
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|10450875|gb|BE924799.1|BE924799
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: AGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|91875123|gb|EB405080.1|EB405080
genomic: AGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|7216944|gb|AW563051.1|AW563051
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCAEST: gi|211524979|gb|FL195247.1|FL195247
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGGGTTCAACCGTGAGCTTGTGCTAGAAGTTTTCTTTGCA
EST: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGG CTCGAGGGAATGGG
genomic: TGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctct ... tcctgaacagCTCGAGGGAATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACATACTAGGTCAACTGGCAGCTGCTGTGCCACAAACGCTGACAGTTACCCCAGAGGAACGGGAGGCTATCCAGCGGgtacatctcttttataacttattgtgttatttgcagttcatcttaaatattccttttgtcttgacctatgtgtttccagataatttgctcatgtttgcat
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