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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTGgtaagcaggtcctctgtatttggttccctgttttcttcgtgcatataagttttctcttaaaatgaaatgagagtacatgttcatgataatgtggctaaat...

Basic information

species Zea mays
transcript GRMZM2G034143_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034143_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g17320.3 (Oryza sativa), 5'ss of exon 10
GTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTGgtaagcagg--tcctctgt----atttggt----tccctgttttcttcgtgcat-ataagttttctcttaaaatgaaatgagagtacatgttca-tgataatgtggctaaat
||||| || |||||||||||||||||||| ||  |||||||||||||||| ||||| ||||||| | ||   | | ||||    ||| | |    ||| |||  | |||  |  | | || || |||||| ||||| |  |||| | | || ||  || || |          
GTTGTTGAGCATGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTGgtaggtagtattgcactgtgaccattcgttgtcttccttgtactgttctggtgttacaaattatctcttcaaatgca--gagaat-cttgctcgctgctagtt---------

upper sequence: GRMZM2G034143_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 10
GTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTGgtaagcagg--tcctctgtatttggttccctgttttcttcgtgcatataagttttctcttaaaatgaaatgagagtacatgttcatgataatgtggctaaat---
||||| || |||||||||||||||||||| ||  ||||||| |||||||| ||||| ||||||||| ||   | | | ||      |  |  || ||| | |      | || | |  |   |||| |  | |  | | | | || || |   |   |||  |   
GTTGTCGAGCATGGTCTTGGTCATCTTCCATTCAAGGAAAAACAGGTCATAACTCCAACTGgtaagtagtattgcacagtcgccattcacgcgtgttccttgcattgttcaggtgttac---aaattatcttaatgcagaggatcttgct--cgctactagtttgt

upper sequence: GRMZM2G034143_T03 (Zea mays), 5'ss of exon 11
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 10
GTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTGgtaagcaggtcctctgtatttggttccctgttttcttcgtgcatataagttttctcttaaaatgaaatgagagtacatgttcatgataatgtggctaaat--
||||| |||||||| || ||||||||||| ||    ||||||||||| |||||||| |||||||||| | |  |    | | |    |||| ||        | |     || | |    |  |  | ||  ||| |    | | |||        |      
GTTGTTGAACATGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgatattactcaat-gaccacctgattgtacaactcttgctgtttgtgttggcattttcattggtagtgccaagtta-gatgggccatttgctctc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148943393|gb|EC888452.2|EC888452
EST:     TGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTG                         GATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAG
genomic: TGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTGgtaagcaggt ... gtgtatgcagGATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAG
EST: gi|60340284|gb|DN207257.1|DN207257
EST:     TGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTG                         GATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAG
genomic: TGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTGgtaagcaggt ... gtgtatgcagGATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAG
EST: gi|110957674|gb|EE177726.1|EE177726
EST:     CTTTTCAGGAAAAGCAGGTCATCACTCCGACTG                         GATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAG
genomic: CTTTTCAGGAAAAGCAGGTCATCACTCCGACTGgtaagcaggt ... gtgtatgcagGATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAG
EST: gi|78113248|gb|DV531642.1|DV531642
EST:     TTTCAGGAAAAGCAGGTCATCACTCCGACTG                         GATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAG
genomic: TTTCAGGAAAAGCAGGTCATCACTCCGACTGgtaagcaggt ... gtgtatgcagGATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAG