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ATTGATGACATGGTTGCATATGCACTTAAGAGTGAAGGAGGCTACGTGTGGGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCACAAGgtcatgatatacaaacttctgaatccatgcatagaacatgctcagtattaccttttccccttgcgtgacaatcaacaaggctaaagtgcattctaataca...
species | Zea mays |
transcript | GRMZM2G033515_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCACAAG GTTTTGGCTCTTTGGGTTTGATGACATCAGTGTTGEST: gi|32850747|gb|CD990428.1|CD990428
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCACAAGgtcatgatat ... caatgtgcagGTTTTGGCTCTTTGGGTTTGATGACATCAGTGTTG
EST: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCACAAG GTTTTGGCTCTTTGGGTTTGATGACATCAGTGTTGEST: gi|32850346|gb|CD990027.1|CD990027
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCACAAGgtcatgatat ... caatgtgcagGTTTTGGCTCTTTGGGTTTGATGACATCAGTGTTG
EST: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCACAAG GTTT-GGCTCTTTGGGTTTGATGACATCAGTGTTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCACAAGgtcatgatat ... caatgtgcagGTTTTGGCTCTTTGGGTTTGATGACATCAGTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATGACATGGTTGCATATGCACTTAAGAGTGAAGGAGGCTACGTGTGGGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCACAAGgtcatgatatacaaacttctgaatccatgcatagaacatgctcagtattaccttttccccttgcgtgacaatcaacaaggctaaagtgcattctaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG