Sequence
atgc intronic sequence ATGC exonic sequenceATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAATCAGgtatctttctactcaaatgttactttgtttgtaatttcactaaagcttctggataacttaattgtaccatttgcttaacttggcttcatggttgatgtta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G032222_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 5'ss of exon 11
ATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAATCAGgtatctttctactcaaatgttactttgtttgtaatttcactaaagcttctggataacttaattgtaccatttgcttaac-ttggcttcatggttgatgtta------
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ATACCAAATCCAGTTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGGTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctctttac----gtgatgctttgagctttatgttg-tagtgctgcctgttcactt--ttatgtcaattactttacatttctttcagagtacacattttgatct
upper sequence: GRMZM2G032222_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA15G03360.1 (Glycine max), 5'ss of exon 11
ATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAATCAGgtatctttctactcaaatgttactttgtttgtaatttcactaaagcttctggataacttaattgtaccatttgcttaacttggcttcatggttgatgtta---------
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ATCCCATATCCAGTTTTTCCTGGAGGAGCAATTATTGGATGTTCAGCTGGCTTCATGAATGTGCCAAAGATAAAGGGAACTCACACGGCAATGAAATCAGgtaggggcttagtcaatt-ctactggat---tgatttttc---agcatattgctaa-ttggtatttttttttactgaagttaattttgtagttt-tgttgaaaagaatt
upper sequence: GRMZM2G032222_T01 (Zea mays), 5'ss of exon 11
lower sequence: AT2G43400.1 (Arabidopsis thaliana), 5'ss of exon 11
ATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAATCAGgt----atctttctactc--aaatgttactttgtttgtaatttcactaaagcttctggataacttaattgtaccatttgcttaacttggcttcatggttgatgtta
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ATTCCCTATCCAGTTTTTCCTGGAGGAGCAATAATTGGATGTTCAGCTGGTTTTCTCAATGTACCCAAGATTAAGGGAACACACACTGCAATGAAATCAGgtcacaatgtttttgataggaaacgtt-ttctttttccattgtcccttcaatgaattctcatcttaattacatctatatcttacag--------------------
upper sequence: GRMZM2G032222_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv05s0102g01110.t01 (Vitis vinifera), 5'ss of exon 11
ATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAATCAGgtatctttctactcaaatgttactttgtttgtaatttc---actaaagcttctggataacttaattgt--accatttgcttaacttggcttcatggttgatgtta
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ATTCCATATCCAGTTTTCCCAGGTGGAGCAATCATTGGATGCTCAGCTGGCTTCCTAAACGTCCCAAAGATAAAGGGAACACATACTGCAATGAAATCAGgtaataatc-gcagagatctca-ttggctgatatatttggaaacaacaaatctggatgatgacattttgaattaatacaaaattttcattacttggcaaatt---
upper sequence: GRMZM2G032222_T01 (Zea mays), 5'ss of exon 11
lower sequence: EFJ21365 (Selaginella moellendorffii), 5'ss of exon 11
ATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAATCAGgtatctttctactcaaatgttactttgtttgtaatttcactaaagcttctggataacttaattgtaccatttgcttaacttggcttcatggttgatgtta
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ATTCCAAAAACTGTGTTTCCGGGTGGAGCACTCATTGGCTGTTCAGCGGGATTCGTCAATGTTCCAAAAATAAAGGGCGCCCATACGGCTATGAAATCAGgtacattc--------gtgtcactaaactggcattttca--agtttctctctgtag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31353246|gb|CD437603.1|CD437603EST: ACCCATACAGCTATGAAATCAG GTATGCTGGCGGCGGAAGC-ACTTTTCAAGTCCCTCGTTGAAGGATCTTCG
genomic: ACCCATACAGCTATGAAATCAGgtatctttct ... tgtaaaaaagGTATGCTTGCGGCGGAAGCAAC-TTTCAAGTCCCTCGTTGAAGGATCTTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACCATATCCAATTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGATTTCTAAATGTTCCCAAAATAAAAGGAACCCATACAGCTATGAAATCAGgtatctttctactcaaatgttactttgtttgtaatttcactaaagcttctggataacttaattgtaccatttgcttaacttggcttcatggttgatgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA