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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcatttagttctacatgtcacttcgtcaccattttcctgttttatacgtatagactatatttttatccgatataaaagcagtaaacccttgtttttctgatgcctactatatgctcatggaagttctgctatccggctatgcctgcag

Basic information

species Zea mays
transcript GRMZM2G031572_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031572_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g36760.1 (Oryza sativa), 5'ss of exon 11
GTTCTAAAATTGTTTTTGCAAATGGATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcatttagttctacatgtcacttcgtcaccattttcctgttttatacgtatag-actatatttttatccgatataaaagcagtaaacccttgtttttctgatgcctactatatgctcatggaagttctg-ctatccggctatgcctgcag
|||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||| |     ||||       || |  ||||||   ||||| |     |||| ||| | ||| ||||  |||| |     || ||    |||   |    |   ||    ||  | ||     | |    |||    | |||  | |||
GTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAATgtgagcatctg----tacag------tcctggccatttctttgtttca-----atagcactgtttttgtatctcatatgagcatggttaaatagtgtgaatgcattttttatggcattatgatatgcttacaaattatttttcaatgggtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76291128|gb|DV030696.1|DV030696
EST:     ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT                         TGCCATCATACTTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
EST: gi|211191456|gb|FL473730.1|FL473730
EST:     ATCTCAAGACCCATGGCGCCACGCTTYTAAGCAGAAATCATCAGACGAAT                         TGCCATCATACTTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
EST: gi|91877512|gb|EB407469.1|EB407469
EST:     ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT                         TGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
EST: gi|67038480|gb|CO464800.1|CO464800
EST:     ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT                         TGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
EST: gi|32827533|gb|CD967211.1|CD967211
EST:     ATCTCAAGACCCATGGCGCCATGCTTCTAAGCAGAAATCATCAGACGAAT                         TGCCATCATAC
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATAC
EST: gi|31355151|gb|CD439508.1|CD439508
EST:     ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAAT                         TGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT
genomic: ATCTCAAGACCCATGGCGCCACGCTTCTAAGCAGAAATCATCAGACGAATgtgagcattt ... atgcctgcagTGCCATCATACCTAATTGAGTGCAAGAACTGCGGACACTGCAGTGATCTCT