1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGAATTAATTATAAGATCATTGTTGGCTGCAAGGGATGCTTGCCTTGAGATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctatacataactgcaagtactgtagtatagcatgctcgaaggaagtatattcagtatgacgtttggcataatcacagcagtatgggtgactaagttacgaaattgtaggtataatataacagggtcaatattcttattcaatcttgtttgacatctttgccctaattttgtag
species | Zea mays |
transcript | GRMZM2G030839_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCC----A- ATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAGEST: gi|31664517|gb|CD573450.1|CD573450
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCC----A- ATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAGEST: gi|31664552|gb|CD573485.1|CD573485
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCC----A- ATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAGEST: gi|211419603|gb|FL445135.1|FL445135
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGNTCC----A- ATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAGEST: gi|149108945|gb|EE189920.2|EE189920
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCC----A- ATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAGEST: gi|78021524|gb|DV489911.1|DV489911
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAG ATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAGEST: gi|149015115|gb|EE044876.2|EE044876
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCC----A- ATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAGEST: gi|12968561|gb|BG265507.1|BG265507
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAG ATTGAGCCAGATTCGCAAACACGGCTACTAGATGCCCCTATGAATATGGAGEST: gi|6020336|gb|AW065264.1|AW065264
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAG ATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAGEST: gi|93281729|gb|EB673993.1|EB673993
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCC----A- ATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAGEST: gi|211002004|gb|FL458771.1|FL458771
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
EST: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCC----A- ATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
genomic: ATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctata ... aattttgtagATTGAGCCAGATTCACAAACACGGCTACTAGATGCCACTATGAATATGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAATTAATTATAAGATCATTGTTGGCTGCAAGGGATGCTTGCCTTGAGATAAGGCTTCACATGCGAGAGATGGGCATAGCAGCTGGTGTTCCAGTAAGgtcccctatacataactgcaagtactgtagtatagcatgctcgaaggaagtatattcagtatgacgtttggcataatcacagcagtatgggtgactaagttacgaaattgtaggtataatataacagggtcaatattcttattcaatcttgtttgacatctttgccctaattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG