1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagtaaacattgcaacttctatacccatagtatgaatcttactttgacatgtgccatttcag
species | Zea mays |
transcript | GRMZM2G029566_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACCCTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTAACATGGAACGGGCAGAAGEST: gi|211273148|gb|FL031471.1|FL031471
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|76920585|gb|DV168249.1|DV168249
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|149099313|gb|EE185349.2|EE185349
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211273139|gb|FL031462.1|FL031462
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAASEST: gi|31355627|gb|CD439984.1|CD439984
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCGCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|6403389|gb|AW171864.1|AW171864
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACGGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|148929744|gb|EC876669.2|EC876669
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACCCTGAGTGGACCT GAACCGGACTCCCTCGGGTGTTTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|29545139|gb|CB605317.1|CB605317
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211248919|gb|FL466732.1|FL466732
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|71328227|gb|DR800747.1|DR800747
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|148983239|gb|EE029205.2|EE029205
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTTTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|33096207|gb|CF056201.1|CF056201
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: ACTGGCACACTCAGTGGACCT GAACCGGACTCCCTCGGATGTCTATTGGAGCTGACATGGAACGGGCAGAAGEST: gi|78124352|gb|DV542736.1|DV542736
genomic: ACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211273147|gb|FL031470.1|FL031470
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: ATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|60346412|gb|DN213385.1|DN213385
genomic: ATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|149082177|gb|EE171358.2|EE171358
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211273144|gb|FL031467.1|FL031467
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|213191212|gb|FM191474.1|FM191474
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCGACTGG-ACACTGAGTGGACCT NNNCCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211273149|gb|FL031472.1|FL031472
genomic: GCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: ATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|83278342|gb|DV942350.1|DV942350
genomic: ATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: CAACATGAGGCCGGGGGATATAGATTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|148949166|gb|EC894602.2|EC894602
genomic: CAACATGAGGCCGGGGGATATA-TTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|4730752|gb|AI649918.1|AI649918
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|116829759|gb|EC871644.1|EC871644
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: ACTGGCACACTGAGTGGA-CT GAAACGGACTCCCTC-GGTGTCTGCTGGAGCTGACAT-GAACGGGCAGAAGEST: gi|211273143|gb|FL031466.1|FL031466
genomic: ACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|4610044|gb|AI600883.1|AI600883
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211059340|gb|FL474462.1|FL474462
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211273142|gb|FL031465.1|FL031465
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|91052882|gb|EB163300.1|EB163300
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211273145|gb|FL031468.1|FL031468
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211273141|gb|FL031464.1|FL031464
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|149042086|gb|EE047064.2|EE047064
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211273140|gb|FL031463.1|FL031463
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|148946153|gb|EC891447.2|EC891447
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|116829718|gb|EC871187.1|EC871187
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: ACACTGAGAT-GACCT GAA-CGGACTCCCTCTGGT-TCTGCTGGAGCTGACATGGAACGGGCAGAAEST: gi|86465953|gb|DY232326.1|DY232326
genomic: ACACTGAG-TGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAA
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|211228559|gb|FL433551.1|FL433551
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAGEST: gi|149076832|gb|EE165487.2|EE165487
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
EST: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCT GAACCGGACTCCCTCGGGTGTTTGCTGGAGCTGACATGGAACGGGCAGAAG
genomic: GCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagta ... gccatttcagGAACCGGACTCCCTCGGGTGTCTGCTGGAGCTGACATGGAACGGGCAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagtaaacattgcaacttctatacccatagtatgaatcttactttgacatgtgccatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA