1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacactgcatattcgtttttttttcactttaaatactaacgtgtgctcctgcaccgttcgagaaaaagaaatactaatgtgtgttaataggatcccaactattcaaccatataatgttttgccatagcacataacagtgctggcacatttcttgtaaccaatttttgcacag
species | Zea mays |
transcript | GRMZM2G029566_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|76920585|gb|DV168249.1|DV168249
genomic: CACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|149099313|gb|EE185349.2|EE185349
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|211273139|gb|FL031462.1|FL031462
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: CACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|31355627|gb|CD439984.1|CD439984
genomic: CACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|6403389|gb|AW171864.1|AW171864
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: CAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|32851376|gb|CD991057.1|CD991057
genomic: CAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGNAGCTAGCACACCACACCATCAACGGATEST: gi|148929744|gb|EC876669.2|EC876669
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGAT
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACCCCATCAACGGATGCAAEST: gi|29545139|gb|CB605317.1|CB605317
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|211248919|gb|FL466732.1|FL466732
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCCATCAACGGATGCAEST: gi|71328227|gb|DR800747.1|DR800747
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACA-CCATCAACGGATGCA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|148983239|gb|EE029205.2|EE029205
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: GCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|78124352|gb|DV542736.1|DV542736
genomic: GCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|60346412|gb|DN213385.1|DN213385
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|211273144|gb|FL031467.1|FL031467
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: CACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|83278342|gb|DV942350.1|DV942350
genomic: CACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|4730752|gb|AI649918.1|AI649918
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|211273143|gb|FL031466.1|FL031466
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|211059340|gb|FL474462.1|FL474462
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|211273142|gb|FL031465.1|FL031465
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: CAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|91052882|gb|EB163300.1|EB163300
genomic: CAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|211273145|gb|FL031468.1|FL031468
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: CACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|211273141|gb|FL031464.1|FL031464
genomic: CACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|149042086|gb|EE047064.2|EE047064
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACCCCATCAACGGATGCAAEST: gi|211273140|gb|FL031463.1|FL031463
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|148946153|gb|EC891447.2|EC891447
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|86465953|gb|DY232326.1|DY232326
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|211228559|gb|FL433551.1|FL433551
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAAEST: gi|149076832|gb|EE165487.2|EE165487
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
EST: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCT GTATTGGACGCTGACACAGCAGCTAGCACCCCACCCCATCAACGGATGCAA
genomic: AAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacac ... ttttgcacagGTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTAATTTCAAGCATCTgtaagcacactgcatattcgtttttttttcactttaaatactaacgtgtgctcctgcaccgttcgagaaaaagaaatactaatgtgtgttaataggatcccaactattcaaccatataatgttttgccatagcacataacagtgctggcacatttcttgtaaccaatttttgcacag
- - - - - - - - AGATCA