1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TAAGTTTACAGTTTCTATATTAAGGAATAACACTCAGAGGACCCATTGGCGTATTAAGACCTATCTTGCTATTAGCCACATGGATGCTGGAAAAATTGGGgtaagtaccacaaggaattacttaacataattgataatcctcttctcttagctgttcgattttttccccagtgtattaaaactgtcttagcgttgcatctttgtttttcttggcag
species | Zea mays |
transcript | GRMZM2G028914_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTATTAAGACCTATCTTGCTATTAGCCACATGGATGCTGGAAAAATTGGG ACTATAGTTGCTGACATGAGGAAAGTTTTGGCAAAAAATCCGCATATAGAAEST: gi|211013706|gb|FL252300.1|FL252300
genomic: GTATTAAGACCTATCTTGCTATTAGCCACATGGATGCTGGAAAAATTGGGgtaagtacca ... ttcttggcagACTATAGTTGCTGACATGAGGAAAGTTTTGGCAAAAAATCCGCATATAGAA
EST: GTATTAAGACCTATCTTGCTATTAGCCACATGGATGCTGGAAAAATTGGG ACTATAGTTGCTGACATGAGGAAAGTTTTGGCAAAAAATCCGCATATAGAAEST: gi|211013707|gb|FL252301.1|FL252301
genomic: GTATTAAGACCTATCTTGCTATTAGCCACATGGATGCTGGAAAAATTGGGgtaagtacca ... ttcttggcagACTATAGTTGCTGACATGAGGAAAGTTTTGGCAAAAAATCCGCATATAGAA
EST: GTATTAAGACCTATCTTGCTATTAGCCACATGGATGCTGGAAAAATTGGG ACTATAGTTGCTGACATGAGGAAAGTTTTGGCAAAAAATCCGCATATAGAAEST: gi|32935785|gb|CF040597.1|CF040597
genomic: GTATTAAGACCTATCTTGCTATTAGCCACATGGATGCTGGAAAAATTGGGgtaagtacca ... ttcttggcagACTATAGTTGCTGACATGAGGAAAGTTTTGGCAAAAAATCCGCATATAGAA
EST: GTATTAAGACCTATCTTGCTATTAGCCACATGGATGCTGGAAAAATTGGG ACTATAGTTGCTGACATGAGGAAAGTTTTGGCAAAAAATCCGCATATAGAA
genomic: GTATTAAGACCTATCTTGCTATTAGCCACATGGATGCTGGAAAAATTGGGgtaagtacca ... ttcttggcagACTATAGTTGCTGACATGAGGAAAGTTTTGGCAAAAAATCCGCATATAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGTTTACAGTTTCTATATTAAGGAATAACACTCAGAGGACCCATTGGCGTATTAAGACCTATCTTGCTATTAGCCACATGGATGCTGGAAAAATTGGGgtaagtaccacaaggaattacttaacataattgataatcctcttctcttagctgttcgattttttccccagtgtattaaaactgtcttagcgttgcatctttgtttttcttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA