1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TACATAACTTTTTTATTTTGAACTAAGTGACATCACTATATTTTCCTATGAAATATAGGTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatcttatatgtatcctacatggcatcctctgaattggtttactcctgtgagcaatctacatatttgtcgattagttacatacacaactctttt...
species | Zea mays |
transcript | GRMZM2G028307_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCGTTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|71444846|gb|DR825896.1|DR825896
genomic: ACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: AAATATAGGTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|32834923|gb|CD974601.1|CD974601
genomic: AAATATAGGTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: GTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATCTATCTCGCGTTCTTCAATCTCGACTCCATGAGCAGGAAGATGAEST: gi|93013110|gb|EB638630.1|EB638630
genomic: GTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
EST: AAATATAGGTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAG GAGAAATTTATTTTGCATTTTTCAATCTCGACTCCATGAGCAGGAAGATGA
genomic: AAATATAGGTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatc ... catggtgcagGAGAAATCTATCTCGCATTCTTCAATCTCGACTCCATGAGCAGGAAGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACATAACTTTTTTATTTTGAACTAAGTGACATCACTATATTTTCCTATGAAATATAGGTACCAGTGGAGGTCGGGCATGGATTGCAACTGGAAGTGAAGgttagttatcttatatgtatcctacatggcatcctctgaattggtttactcctgtgagcaatctacatatttgtcgattagttacatacacaactctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG