1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACCAAACCCAAAACAGAGAAGAAAAAGTTATTATTTTTCAAGAAAGAAGAGAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAGgtaactgtgagcttccaaagaaacactatattcttgaaacttcattgtgattgccaatgtaaccttgtgcggttccctgtag
species | Zea mays |
transcript | GRMZM2G025231_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAG GAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGAEST: gi|211147734|gb|FL419640.1|FL419640
genomic: GAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAGgtaactgtga ... ttccctgtagGAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGA
EST: GAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAG GAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGAEST: gi|211219468|gb|FL394125.1|FL394125
genomic: GAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAGgtaactgtga ... ttccctgtagGAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGA
EST: ACCAATCCCCTGCATATGCTCTTGGTSAAATTGACGAAGCTGCTCCAG GAGCTGAGAATNAAAAGGCCGGTATTGTAAATCAACAAAAATTASRAAAGAEST: gi|32850633|gb|CD990314.1|CD990314
genomic: ACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAGgtaactgtga ... ttccctgtagGAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGA
EST: GAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAG GAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGAEST: gi|32941882|gb|CF046701.1|CF046701
genomic: GAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAGgtaactgtga ... ttccctgtagGAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGA
EST: ACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAG GAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGAEST: gi|211275142|gb|FL390045.1|FL390045
genomic: ACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAGgtaactgtga ... ttccctgtagGAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGA
EST: GAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAG GAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGAEST: gi|211159525|gb|FL378589.1|FL378589
genomic: GAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAGgtaactgtga ... ttccctgtagGAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGA
EST: GAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAG GAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGA
genomic: GAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAGgtaactgtga ... ttccctgtagGAGCTGAGAATGAAAAGGCCGGTATTGTAAATCAACAAAAATTAGAAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAAACCCAAAACAGAGAAGAAAAAGTTATTATTTTTCAAGAAAGAAGAGAACCAATCCCCTGCATATGCTCTTGGTGAAATTGACGAAGCTGCTCCAGgtaactgtgagcttccaaagaaacactatattcttgaaacttcattgtgattgccaatgtaaccttgtgcggttccctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT