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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAGGCTGCAGGCAGCGTTGGGAGAACAATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagtgccccttattgtgactgcatccttaatccttatttttccgtttgaagcatgttcacttcatacacccttacacaaaaggaaccatttaggtctaa...

Basic information

species Zea mays
transcript GRMZM2G024690_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024690_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 5'ss of exon 12
GTTTGGAGGCTGCAGGCAGCGTTGGGAGAACAATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagtgccccttattgtgactgcatccttaatccttatttttccgtttgaagcatgttcacttcatacaccct-tacacaaaag-gaaccatttaggtctaa----
|| |||||||| || ||||| |||||||| ||||| ||||| ||||| |||||||| ||||||| |||||||||||||||||||    | | |  |||||||      | ||   | ||  ||     | |   |  ||      ||||| ||| || |||  |  ||  |  |||  |  |     
GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGTACCAAGCAGGAATTTGAAAGGCTTCAAAATgtaccatctcct--tgtgact----tgtgaagtttcatcattttacattatataaattggtgcaatacatcctatagacatgattgagtccattaacttgaggaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33098379|gb|CF058339.1|CF058339
EST:     AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAAT                         GAGAAGGTTCTTTGTAGGGTTTGCTACGAGGGAGAGATATGCATGGTGCTT
genomic: AATCTGAAATCACCAAGTGTACCAAACAGGAATATGAAAGGCTTCAAAATgtagtgcccc ... tcgtttttagGAGAAGGTTCTTTGTAGGGTTTGCTACGAGGGAGAGATATGCATGGTGCTT