1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CGGTGGACCTCTCTCCGTGGTTGAGTACAGCGAAATGGACGCAGCTATGACTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttctgtcctccacttgtcgttcccttccgccctacctccctccctccaaactgtaacagctgcatattttctcctctctctctctcgttttccccctcccctag
species | Zea mays |
transcript | GRMZM2G019986_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|78089271|gb|DV517645.1|DV517645
genomic: CTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: AGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|211210620|gb|FL436849.1|FL436849
genomic: AGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: GGGCGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|110497708|gb|EE015394.1|EE015394
genomic: GGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: ATCAATCAGTCGACAGGGGGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|16379775|gb|BI993142.1|BI993142
genomic: ATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: CGACAGGGCGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|71774723|gb|DR972601.1|DR972601
genomic: CGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: CTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|148935255|gb|EC879292.2|EC879292
genomic: CTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: GAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|149102321|gb|EE287688.2|EE287688
genomic: GAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: ATCAATCAGTCGACAGGGGGACTCCGTTACTGCGGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|18166601|gb|BM336440.1|BM336440
genomic: ATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: AGGGCGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|40335845|gb|CK369915.1|CK369915
genomic: AGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: CTACTGAGATCAATCAGTCGACAGGACGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|67018099|gb|CO446848.1|CO446848
genomic: CTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: CTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|37375243|gb|CF624047.1|CF624047
genomic: CTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: CTACTGAGATCAATCAGTCGACAGGACGACTCCGTTACTGCTGGAGCAAC ATCTGCNTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|17931736|gb|BM268696.1|BM268696
genomic: CTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: CTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGCEST: gi|40303710|gb|CK348097.1|CK348097
genomic: CTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
EST: CGACTCCGTTACTGCTGGAGCAAC ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
genomic: CGACTCCGTTACTGCTGGAGCAACgtatggtttc ... cctcccctagATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCGAACAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGGACCTCTCTCCGTGGTTGAGTACAGCGAAATGGACGCAGCTATGACTACTGAGATCAATCAGTCGACAGGGCGACTCCGTTACTGCTGGAGCAACgtatggtttctgtcctccacttgtcgttcccttccgccctacctccctccctccaaactgtaacagctgcatattttctcctctctctctctcgttttccccctcccctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA