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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAGgtgcatctctgataatttgcttgcaacatctagcttgcagttatttaatttatctttgactgctcaacagaacattatatttggttgtgtaattgcgaaa...

Basic information

species Zea mays
transcript GRMZM2G019361_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019361_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 12
GTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAGgtgcatctctgataatttgcttgcaacatctagcttgcagttatttaa---tttat-ctttgactgctcaacagaacattatatttggttgtgtaattgcgaaa
|| ||||||||  ||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||||| || || |   | | ||||    ||   |     |||||||    ||||| |  |    |||| |   | || | | |   |||    | ||     |
GTTAATCAAATTAGAGATTCTTTGGCAGTTATGGGCAACAACAGCACTGCTTTTAGCCTGCCCCAGgtgcatttccgaca---tccatgcagtgcctcattaatc-ttatttatagttttatacgcttctcgctccatcaagcactttttaccgtttaacatttctatta

upper sequence: GRMZM2G019361_T03 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA10G03660.1 (Glycine max), 5'ss of exon 13
GTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAGgtgcatctctgataatttgcttgcaacatctagcttgcagttatttaatttatctttgactgctcaacagaacattatatttggttgtgtaat-tgcgaaa----
||||||||||| |||||||| ||||| ||||||||  ||||||| ||||| |||||||| || || ||   | ||       ||| ||  ||  || |  |  |  | ||||  | |   ||  ||||       |       ||| ||| | | | || |  | |     
GTCAATCAAATCCGAGATTCATTGGCTGTTATGGGTGACAACAGTACTGCCTTTAGCTTACCGCAAgtatgtgtcc-----cttggttcaaaattcaaattctctttaatttcttatcctttctactgtaatttgggtttcattatctggatttctgatatatggagcttt

upper sequence: GRMZM2G019361_T03 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 13
GTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAGgtgcatctctgataatttgcttgcaacatctagcttgcagttatttaatttatctttgactgctcaacagaacattatatttggttgtgtaat-tgcgaaa-
||||||||||| || ||||| |||||  |||||||  ||||||||||||| |||||||| || || ||  || |||  |   ||| ||  ||  || |  || |  | ||||  | |   ||  ||||       |     | ||| ||| | | |  | |  | |  
GTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAAgt--atgtcttgtcccttggttcaaaattcaatttttctttgatttcttatcctttcaactgtaatttgggtttctttatctggatttctgttatatggagc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050205|gb|EB160623.1|EB160623
EST:     ATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAG                         CCGCATCTTCAAAGAACAAAATTATGTGATATGGAGGACAAAGAACTTGAA
genomic: ATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAGgtgcatctct ... gtttatacagCCGCATCTTCAAAGAACAAAATTATGTGATATGGAGGACAAAGAACTTGAA
EST: gi|31361636|gb|CD445993.1|CD445993
EST:     ATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAG                         CCGCATCTTCAAAGAACAAAATTATGTGATATGGAGGACAAAGAACTTGAA
genomic: ATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAGgtgcatctct ... gtttatacagCCGCATCTTCAAAGAACAAAATTATGTGATATGGAGGACAAAGAACTTGAA