1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTGAATACGATGGAATACTCAACCCAACATTTACTGAAGGTCCGTTTGAGCTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctatctgctagttttcaggcaatgacataagtaaaacagaatacatatagccacttcattttttcagtttctttatggaaccaatcaggactgactgggcttgcttttcttttatatgaag
species | Zea mays |
transcript | GRMZM2G019358_T04 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|71760712|gb|DR958649.1|DR958649
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|89106361|gb|DY576578.1|DY576578
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|19351255|gb|BM895787.1|BM895787
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|60352340|gb|DN219313.1|DN219313
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|22489815|gb|BU049738.1|BU049738
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|148936819|gb|EC880960.2|EC880960
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTCCAAGCCCTGAAAGACCGGGGTTEST: gi|211503638|gb|FL133350.1|FL133350
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTTEST: gi|18649686|gb|BM498505.1|BM498505
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
EST: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAG GTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
genomic: CTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctat ... ttatatgaagGTTCGTTCATGTGAGTTCTGCGGGAGTTACAAGACCTGAAAGACCGGGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAATACGATGGAATACTCAACCCAACATTTACTGAAGGTCCGTTTGAGCTTCCTTTTTCGAGTATTAGAGCATACATCAATGAGCCGATCACTCCAAGgtttgtctatctgctagttttcaggcaatgacataagtaaaacagaatacatatagccacttcattttttcagtttctttatggaaccaatcaggactgactgggcttgcttttcttttatatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA