1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTAAAGTACCTTTCTCTTCTCTGAAACCTGTATTCCGTGCTCGTACTGTGACTGATGCTCCACCCTTCGATGCAAGCAACATTACTTCACTACAAgtatcatttcttcctttctttccccttcatcagtaaacgtttgaagaattggtaaactctcatctaaaagttgatgtgacgatttttgtag
species | Zea mays |
transcript | GRMZM2G019358_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGTGACTGATGCTCCACCCTTCGATGCAAGCAACATTACTTCACTACAA CTCATGTTTAGCAAATTTGAATACGATGGAATACTCAACCCAACATTTACTEST: gi|211503639|gb|FL133351.1|FL133351
genomic: CTGTGACTGATGCTCCACCCTTCGATGCAAGCAACATTACTTCACTACAAgtatcatttc ... atttttgtagCTCATGTTTAGCAAATTTGAATACGATGGAATACTCAACCCAACATTTACT
EST: CTGTGACTGATGCTCCACCCTTCGATGCAAGCAACATTACTTCACTACAA CTCATGTTTAGCAAATTTGAATACGATGGAATACTCAACCCAACATTTACTEST: gi|211501308|gb|FL133349.1|FL133349
genomic: CTGTGACTGATGCTCCACCCTTCGATGCAAGCAACATTACTTCACTACAAgtatcatttc ... atttttgtagCTCATGTTTAGCAAATTTGAATACGATGGAATACTCAACCCAACATTTACT
EST: CTGTGACTGATGCTCCACCCTTCGATGCAAGCAACATTACTTCACTACAA CTCATGTTTAGCAAATTTGAATACGATGGAATACTCAACCCAACATTTACTEST: gi|211501307|gb|FL133348.1|FL133348
genomic: CTGTGACTGATGCTCCACCCTTCGATGCAAGCAACATTACTTCACTACAAgtatcatttc ... atttttgtagCTCATGTTTAGCAAATTTGAATACGATGGAATACTCAACCCAACATTTACT
EST: CTGTGACTGATGCTCCACCCTTCGATGCAAGCAACATTACTTCACTACAA CTCATGTTTAGCAAATTTGAATACGATGGAATACTCAACCCAACATTTACT
genomic: CTGTGACTGATGCTCCACCCTTCGATGCAAGCAACATTACTTCACTACAAgtatcatttc ... atttttgtagCTCATGTTTAGCAAATTTGAATACGATGGAATACTCAACCCAACATTTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAAAGTACCTTTCTCTTCTCTGAAACCTGTATTCCGTGCTCGTACTGTGACTGATGCTCCACCCTTCGATGCAAGCAACATTACTTCACTACAAgtatcatttcttcctttctttccccttcatcagtaaacgtttgaagaattggtaaactctcatctaaaagttgatgtgacgatttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA