1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACATGCTATTCAATTGATATCACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAGgtatatctgccgagcttttgttcctacaaactgatccttgttcccgcaagtcttatgatctctaagcttatatatgttccctatcag
species | Zea mays |
transcript | GRMZM2G018697_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAG GCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|211320429|gb|FL002694.1|FL002694
genomic: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAGgtatatctgc ... tccctatcagGCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAG GCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|50328442|gb|CO523568.1|CO523568
genomic: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAGgtatatctgc ... tccctatcagGCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAG GCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|93284660|gb|EB676924.1|EB676924
genomic: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAGgtatatctgc ... tccctatcagGCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: AAATCTGCAAG GCTGATTTCGAGGAAGTCAGGGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|211320427|gb|FL002692.1|FL002692
genomic: AAATCTGCAAGgtatatctgc ... tccctatcagGCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAG GCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|31612365|gb|CD568987.1|CD568987
genomic: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAGgtatatctgc ... tccctatcagGCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAG GCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|76287195|gb|DV026763.1|DV026763
genomic: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAGgtatatctgc ... tccctatcagGCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAG GCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCTEST: gi|149051700|gb|EE155813.2|EE155813
genomic: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAGgtatatctgc ... tccctatcagGCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCT
EST: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAG GCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCT
genomic: CACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAGgtatatctgc ... tccctatcagGCTGATCTCGAGGAAGTCAGTGGGCTCTATTTGGATGCCAAATCCTCGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGCTATTCAATTGATATCACCTGCCAGCGTGGTCTCAAAGACTAATGGAAGAGAGAAAATCTGCAAGgtatatctgccgagcttttgttcctacaaactgatccttgttcccgcaagtcttatgatctctaagcttatatatgttccctatcag
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA