Sequence
atgc intronic sequence ATGC exonic sequenceTGCACTTGGTAATATTTTGAAGTTCCGAAGGAAAAATTGGCAATTTGATGTAATTGGTGGTTTTGTGTACTTTGTCTTGGTTTTCTCAATGTTTCCACAGgtgagagaaactagatgagtttaccttttttatgaactgtatgttagaaagctgcccttatgttaaagtataacctttaaaattatttgtttttacatta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 5'ss of exon 12
TGCACTTGGTAATATTTTGAAGTTCCGAAGGAAAAATTGGCAATTTGATGTAATTGGTGGTTTTGTGTACTTTGTCTTGGTTTTCTCAATGTTTCCACAGgtgagagaaactagatgagtttaccttttttatgaactgtatgttagaaagctgcccttatgttaaagtataacctttaaaattatttgtttttacatta---
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TGCACTTGGTAATATTTTGAAGTTCCGAAGGAAGAATTGGCAGTTTGATGTGATTGGTGGTTTTGTGTACTTTGTTTTGGTTTTCTCGATGTTTCCGCAGgtgagaga--ctaaatta-tttatgaattatttaattcatagtaaatcattttgcttatgcactatgtggttaatgtgaatacttatagcctagaaagaccat
upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 12
TGCACTTGGTAATATTTTGAAGTTCCGAAGGAAAAATTGGCAATTTGATGTAATTGGTGGTTTTGTGTACTTTGTCTTGGTTTTCTCAATGTTTCCACAGgtgagagaaactagatgagtttac--cttttttatgaactgtatgttagaaagctgcccttatgtt---aaagtataacctttaaaattatt-tgtttttacatta
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TGCATTGGGAAATATTTTGAAGTTCCGAAAGAAGAATTGGCAGTTTGATTTCATTGGTGGCATTATATATTTTGTATTGGTTTTTTCTATGTTTCCACAGgtgagtttctgttggttttcttatgatgtcttgccatattgattaccaagactctgtggttggacccgaaaagtgaaaacctgataattaagatgacttt------
upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 8
lower sequence: PP1S147_29V6.1 (Physcomitrella patens), 5'ss of exon 11
TGCACTTGGTAATATTTTGAAGTTCCGAAGGAAAAATTGGCAATTTGATGTAATTGGTGGTTTTGTGTACTTTGTCTTGGTTTTCTCAATGTTTCCACAGgtgagagaaact-----------agatgagtttaccttttttatgaactgtatgttagaaagctgcccttatgttaaagtataacctttaaaattatttgtttttacatta---------------------------------
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AGCATTGGGCAACATTTTAAAATTCAGAAGGAAGAATTGGCAATTTGATGTTATTGGTGGTATTGTGTACTTTGTGTTAGTGTTTTCAATGTTTCCACAGgtaaaatttactctgtcattctaaaaagaatttctactatttcatatttggatatttggaaatt---tgaatagcacaatttgacctg-aaaattactgattataataaaatcctttcgctggatcatgaaaagatggtttcag
upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 8
lower sequence: PP1S72_100V6.1 (Physcomitrella patens), 5'ss of exon 10
TGCACTTGGTAATATTTTGAAGTTCCGAAGGAAAAATTGGCAATTTGATGTAATTGGTGGTTTTGTGTACTTTGTCTTGGTTTTCTCAATGTTTCCACAGgtgagagaaactagatgagtttaccttttttatgaactgtatgttagaaagctgcccttatgttaaagtataacctttaaaattatttgtttttacatta-------
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TGCATGGGGAAACATCTTGAAGTTTCGAAAGAAGAATTGGCGTTTTGATGTAATTGGTGGTGTTGTATACTTTATATTGGTTTTCTCAATGTTCCCACAGgtgagagaa-ctggcctcttttttgctttctgt---tctttttttctgtttttatttttatatta---ttttttctgtaaatttcttttttcttttttaattttctgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14529537|gb|BI096670.1|BI096670EST: TAATTGGTGGTTTTGTGTACTTTGTCTTGGTTTTCTCAATGTTTCCACAG TGTGACTCATTTCACATCTTACATGAAGACTCCTGGGCTGGTCGTATCAAT
genomic: TAATTGGTGGTTTTGTGTACTTTGTCTTGGTTTTCTCAATGTTTCCACAGgtgagagaaa ... tgttatccagTGTGACTCATTTCACATCTTACATGAAGACTCCTGGGCTGGTCGTATCAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCACTTGGTAATATTTTGAAGTTCCGAAGGAAAAATTGGCAATTTGATGTAATTGGTGGTTTTGTGTACTTTGTCTTGGTTTTCTCAATGTTTCCACAGgtgagagaaactagatgagtttaccttttttatgaactgtatgttagaaagctgcccttatgttaaagtataacctttaaaattatttgtttttacatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG