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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTCAAGTTGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTGgtaattcatctgtcaaatggaacactgtatactgctgtttttacatatatatttttgttacagttgtttcctcctgcag

Basic information

species Zea mays
transcript GRMZM2G017089_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017089_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g21990.1 (Oryza sativa), 5'ss of exon 13
GATCCTCAAGTTGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTGgtaattcatctgtcaaatggaacactgtatact---gctgtttttacatatatatttttgttacagttgtttcctcctgcag
||||| |||||||| || || ||||||||| ||||||| || |||||||| ||||||||||||| || |  |   || |  |  ||||| |        ||||||    ||| | |   | |||||||| |||  ||||  ||
GATCCACAAGTTGTCACGGGCTCACATGATTCAACTATCAAGTTCTGGGACCTTGTAGCTGgta-tttactttagaattttactactgtgtttcttgagtgttttcttgtatctgtccct-ttacagttatttt-tcctatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76013075|gb|DT940245.1|DT940245
EST:     TGTTACTGGTTCACATGATACAACTATTAAATTCGGGGATCTTGTAGCTG                         GGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGG
genomic: TGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTGgtaattcatc ... cctcctgcagGGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGG
EST: gi|32933221|gb|CF038033.1|CF038033
EST:     TGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTG                         GGAGGACTATGTGTA
genomic: TGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTGgtaattcatc ... cctcctgcagGGAGGACTATGTGTA
EST: gi|71416740|gb|DR803804.1|DR803804
EST:     TGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTG                         GGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGG
genomic: TGTTACTGGTTCACATGATACAACTATTAAATTCTGGGATCTTGTAGCTGgtaattcatc ... cctcctgcagGGAGGACTATGTGTACCCTTACTCACCATAAAAAGTCTGTCCGAGCTATGG