1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAGgcaagtacattaaatctttgcatttcacttgtcctcgttaatacagcaaaaaaagtaatattccttcctttag
species | Zea mays |
transcript | GRMZM2G017086_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAG GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|32866635|gb|CF006317.1|CF006317
genomic: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAGgcaagtacat ... cttcctttagGTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCA
EST: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAG GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|6056638|gb|AW091043.1|AW091043
genomic: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAGgcaagtacat ... cttcctttagGTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCA
EST: GCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAG GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|5846961|gb|AW000040.1|AW000040
genomic: GCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAGgcaagtacat ... cttcctttagGTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCA
EST: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAG GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|12968043|gb|BG264990.1|BG264990
genomic: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAGgcaagtacat ... cttcctttagGTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCA
EST: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAG GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|5901176|gb|AW042276.1|AW042276
genomic: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAGgcaagtacat ... cttcctttagGTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCA
EST: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAG GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|5296339|gb|AI783109.1|AI783109
genomic: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAGgcaagtacat ... cttcctttagGTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCA
EST: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAG GTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCA
genomic: GGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAGgcaagtacat ... cttcctttagGTACTTGACTGTGCAGTTCGTTCGCTTCTTTTGGAAAAGGGAATCAAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTTGAAGACAGAACTTGAGAAAGCTTCACCTACACTGGGTCGAACTGCAGTTTATACTAGAGAATCAAGAATAAATGAGCTGCCTAGgcaagtacattaaatctttgcatttcacttgtcctcgttaatacagcaaaaaaagtaatattccttcctttag
- - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC