1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGAAGACAATATTTACTTGGAAGTGGAGCACAGAAGATTATCCTTCATTAAAAGTTCTTTCAGTGTTGCATCTGAGGCTAATGCTGCTGCTACATCAAGgtaggttttgtcatagctcctatcccttactcaaatcgacaaattttcatccctttatgtgaaaatgaattgtgtacatatttattcttaacag
species | Zea mays |
transcript | GRMZM2G015395_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAAAGTTCTTTCAGTGTTGCATCTGAGGCTAATGCTGCTGCTACATCAAG CTTGAGAAATCTTCGGCATGAAAGAGACATGTTGTACAGGCAAATGCTAAGEST: gi|6465622|gb|AW191081.1|AW191081
genomic: AAAAGTTCTTTCAGTGTTGCATCTGAGGCTAATGCTGCTGCTACATCAAGgtaggttttg ... ttcttaacagCTTGAGAAATCTTCGGCATGAAAGAGACATGTTGTACAGGCAAATGCTAAG
EST: AAAAGTTCTTTCAGTGTTGCATCTGAGGCTAATGCTGCTGCTACATCAAG CTTGAGAAATCTTCGGCATGAAAGAGCCATGTTGTACAGGCAAATGCTAAGEST: gi|8401194|gb|BE056828.1|BE056828
genomic: AAAAGTTCTTTCAGTGTTGCATCTGAGGCTAATGCTGCTGCTACATCAAGgtaggttttg ... ttcttaacagCTTGAGAAATCTTCGGCATGAAAGAGACATGTTGTACAGGCAAATGCTAAG
EST: AAAAGTTCTTTCAGTGTCGCATCTGAGGCTAATGCTGCTGCTACATCAAG CTTGAGAAATCTTCGGCATGAAAGAGACATGTTGTACAGGCAAATGCTAAGEST: gi|7238203|gb|AW573425.1|AW573425
genomic: AAAAGTTCTTTCAGTGTTGCATCTGAGGCTAATGCTGCTGCTACATCAAGgtaggttttg ... ttcttaacagCTTGAGAAATCTTCGGCATGAAAGAGACATGTTGTACAGGCAAATGCTAAG
EST: AAAAGTTCTTTCAGTGTTGCATCTGAGGCTAATGCTGCTGCTACATCAAG CTTGAGAAATCTTCGGCATGAAAGAGACATGTTGTACAGGCAAATGCTAAG
genomic: AAAAGTTCTTTCAGTGTTGCATCTGAGGCTAATGCTGCTGCTACATCAAGgtaggttttg ... ttcttaacagCTTGAGAAATCTTCGGCATGAAAGAGACATGTTGTACAGGCAAATGCTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAGACAATATTTACTTGGAAGTGGAGCACAGAAGATTATCCTTCATTAAAAGTTCTTTCAGTGTTGCATCTGAGGCTAATGCTGCTGCTACATCAAGgtaggttttgtcatagctcctatcccttactcaaatcgacaaattttcatccctttatgtgaaaatgaattgtgtacatatttattcttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT