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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatttccttatcatacttaaatgcataccttctctcattcactacattcatacatgatgctttgctttttattatacag

Basic information

species Zea mays
transcript GRMZM2G014805_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014805_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 30
TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatttccttatcatact-----------------taaatgcataccttctctcattcactac-attcatac-atgatgctttgctttttattatacag
|||||||||||||||||||| ||||| ||||| || |||||||||||    || |||||||| ||||||||||||||| || ||    ||| ||| ||                  | |||  ||||| || |  || ||  |  ||||| | ||||||  |  ||| | ||| | |||
TGGAAGCTTGCATTCATATCTATGAATCGGCCTGAATACCTCCAGGATGTCGACGTTGTATCTGCACGTTTTCAGgcaagttataattttaacatgctaggaagctaggcatgtccatatgtgtacctccttttcttgaccgctgttcatgccatgatgtat--cttctgattctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32944375|gb|CF049194.1|CF049194
EST:     GTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: GTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|22490260|gb|BU050183.1|BU050183
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|211029627|gb|FL157472.1|FL157472
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|18654871|gb|BM499676.1|BM499676
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|32833426|gb|CD973104.1|CD973104
EST:     ACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|18654872|gb|BM499677.1|BM499677
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGCGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|211029629|gb|FL157474.1|FL157474
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGATCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|87152609|gb|DY397398.1|DY397398
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|60400188|gb|DN232995.1|DN232995
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|78025615|gb|DV494002.1|DV494002
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|60400323|gb|DN233130.1|DN233130
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|211029628|gb|FL157473.1|FL157473
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|76019060|gb|DT946230.1|DT946230
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATAC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATAC
EST: gi|76019059|gb|DT946229.1|DT946229
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|211029631|gb|FL157476.1|FL157476
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|18963174|gb|BM660282.1|BM660282
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|211029630|gb|FL157475.1|FL157475
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|4827730|gb|AI668422.1|AI668422
EST:     ACCGGCCAGAGT-CCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|32934161|gb|CF038973.1|CF038973
EST:     CCGGGCAG-GTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: CCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|166670887|gb|EG297611.1|EG297611
EST:     ATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|32940670|gb|CF045489.1|CF045489
EST:     ACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|33094794|gb|CF054788.1|CF054788
EST:     GTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACCAATACCTTGGCTTGGAGCACAC
genomic: GTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAA-CAATACCTTGGCTTGGAGCACAC
EST: gi|18661897|gb|BM501640.1|BM501640
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAG                         AGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACCTTGGCTTGGAGCACACC
EST: gi|94476779|gb|EB705737.1|EB705737
EST:     ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAA                         AGGAGAGATGTATATGGTGCTTGGGAACAATACC
genomic: ACCGGCCAGAGTACCTCCAGGACACTGATGTTGTATCAGCACGTTTTCAGgcatgtgatt ... tattatacagAGGAGAGATGTATATGGTGCTTGGGAACAATACC