1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAATGCTTGTATGATCGGTTGAAACTATTTCCTGGTTTGCTTTCTCCGTCGATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAAgtgagtgttgaatataagcacagtatcagttgaatatatgccactagacacgtgttgactggcaattaagtgcaaagtggttcttactgtcagcagttggattagtcgagtttgaaagtaaagattatgttgcgctgcaaatttcag
species | Zea mays |
transcript | GRMZM2G013908_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAA ATAAGCGAAAATCTAGCACAGATCTCTCTGCAACTCAGCCACCTCTGAAGAEST: gi|26455852|gb|CA827435.1|CA827435
genomic: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAAgtgagtgttg ... caaatttcagATAAGCGAAAATCTAGCACAGATCTCTCTGCAACTCAGCCACCTCTGAAGA
EST: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAA ATAAGCGAAAATCTAGCACAGATCTCTCTGCAACTCAGCCACCTCTGAAGAEST: gi|19822284|gb|BQ048308.1|BQ048308
genomic: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAAgtgagtgttg ... caaatttcagATAAGCGAAAATCTAGCACAGATCTCTCTGCAACTCAGCCACCTCTGAAGA
EST: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAA ATAAGCGAAAATCTAGCACAGATCTCTCTGCAACTCAGCCACCTCTGAAGAEST: gi|76283812|gb|DV023380.1|DV023380
genomic: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAAgtgagtgttg ... caaatttcagATAAGCGAAAATCTAGCACAGATCTCTCTGCAACTCAGCCACCTCTGAAGA
EST: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAA ATAAGCGAAAATCTAGCACAGATCTCTCTGCEST: gi|211271502|gb|FL060904.1|FL060904
genomic: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAAgtgagtgttg ... caaatttcagATAAGCGAAAATCTAGCACAGATCTCTCTGC
EST: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAA ATAAGCGAAAATCTAGCACAGATCTCTCTGCAACTCAGCCACCTCTGAAGAEST: gi|22542929|gb|BU093367.1|BU093367
genomic: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAAgtgagtgttg ... caaatttcagATAAGCGAAAATCTAGCACAGATCTCTCTGCAACTCAGCCACCTCTGAAGA
EST: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAA ATAAGCGAAAATCTAGCACAGATCATCTCCTGCAACTCAGCCACCTCTGAA
genomic: GATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAAgtgagtgttg ... caaatttcagATAAGCGAAAATCTAGCACAGATC-TCT-CTGCAACTCAGCCACCTCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGCTTGTATGATCGGTTGAAACTATTTCCTGGTTTGCTTTCTCCGTCGATGCGGCCTCTTTTACAGAGCAACAAAAGGGTCTTAACCAACAACCCAAgtgagtgttgaatataagcacagtatcagttgaatatatgccactagacacgtgttgactggcaattaagtgcaaagtggttcttactgtcagcagttggattagtcgagtttgaaagtaaagattatgttgcgctgcaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA