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TGAAGTTGCCATTGGTAATGATGAGAAGGATGTGAAAGACTTCCTATTTGGATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATgtatgtttagaatgaacattacatcctgcatacttcaaatgaatgcatgcatttttgcttatatgtctttaagaacgtaacag
species | Zea mays |
transcript | GRMZM2G012501_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTAT GAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGGEST: gi|32839407|gb|CD979088.1|CD979088
genomic: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATgtatgtttag ... aacgtaacagGAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGG
EST: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTAT GAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGGEST: gi|67012331|gb|CO441080.1|CO441080
genomic: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATgtatgtttag ... aacgtaacagGAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGG
EST: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTCAT GAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGGEST: gi|74243906|gb|DT651820.1|DT651820
genomic: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATgtatgtttag ... aacgtaacagGAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGG
EST: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTAT GAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGGEST: gi|32823326|gb|CD963048.1|CD963048
genomic: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATgtatgtttag ... aacgtaacagGAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGG
EST: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTAT GAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGGEST: gi|32837289|gb|CD976967.1|CD976967
genomic: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATgtatgtttag ... aacgtaacagGAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGG
EST: GATCNTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTAT GAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGGEST: gi|67021265|gb|CO450014.1|CO450014
genomic: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATgtatgtttag ... aacgtaacagGAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGG
EST: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTCAT GAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGGEST: gi|211185421|gb|FL310763.1|FL310763
genomic: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATgtatgtttag ... aacgtaacagGAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGG
EST: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTAT GAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGG
genomic: GATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATgtatgtttag ... aacgtaacagGAACCTTCAGAGGAGCCATTTGACATATCTTTGGTGTCAAGAGAAGTCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGTTGCCATTGGTAATGATGAGAAGGATGTGAAAGACTTCCTATTTGGATCTTTTGATGTGCCATTAGCCAACCTGGAAGCAAGCCTAAGAACTTATgtatgtttagaatgaacattacatcctgcatacttcaaatgaatgcatgcatttttgcttatatgtctttaagaacgtaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC