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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTTTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATGgtgagtgtcaatgtgcaattctcatactgcactgttagtgcaatttcttctattattacgccacgtgcatgtccaaatcattagagatatctgtagttgt...

Basic information

species Zea mays
transcript GRMZM2G011575_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011575_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os11g13694.1 (Oryza sativa), 5'ss of exon 11
GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTTTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATGgtgagtgt--caatgtgcaattctcatactgcactgttagtgcaatttcttctattattacgccacgtgcatgtccaaat-cattagagata-tctgtagttgt
|| || || |||||||| || ||||| || |||||||||||||| |||||||| |||||||| |||| ||||||| |||||||||||  ||   || |||| |  |  | |     ||  |  || | ||   |   |   |  ||||||  || |  | ||||    ||  | | | |||| 
GATAAATACATGCAAAACAGGCTAGTAAGGCTAGTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATGgtgagtgtaccatcatgtaattttttt-ttaccaaaataccgtcatgtatttggtagat---ctgcgtgcaattctatttacattctgtattctgtttggttgg

upper sequence: GRMZM2G011575_T02 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA10G00610.1 (Glycine max), 5'ss of exon 11
GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTTTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATGgtgagtgtcaatgtgcaattctcatactgcactgttagtgcaatttcttctattattacgccacgtgcatgtccaaatcattaga-gatatctgtagttgt-
|| || || ||||| ||  | || |||||||| || ||||||||||| || ||||||||||||||||  || ||  ||||||||| | |    |         || || | ||| |    | | ||||  |  | |      |     |    |||  |  ||| ||||  | |  |||| 
GATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAACATTATTAATGgtgagt-ttacccagttgggacattattgaattgtaacattattgtctttaaaaaatgtaggtccctagtaaagaaaagaaaagaagataaat-tgtttgtt

upper sequence: GRMZM2G011575_T02 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA02G00750.1 (Glycine max), 5'ss of exon 11
GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTTTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATGgtgagtgt---caatgtgcaattctcatactgcactgttagtgcaatttcttctattattacgccacgtgcatgtccaaatcattagagatatctgtagttgt
|| || || ||||| || || || |||||||| || ||||||||||| || ||||||||||||||||  || ||  ||||||||| |   || |  |  ||| |   | || |   ||| ||    ||     ||| |    |       | |   | |     ||| | ||   | |||  
GATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAATATTATTAATGgtgagtttacccagttggacattattgaattgtaacattattgt--ctttaaaaattgtaggtctctagtaaaggaaagaaaggaagataaattgtttgtta-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71307832|gb|DR790137.1|DR790137
EST:     ACTAGTATGTGTTTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATG                         ATGCTTGGTTGTGTGCAGTGCAAGATCTCTTCGTGGAGGTGCAAGCATTTT
genomic: ACTAGTATGTGTTTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATGgtgagtgtca ... atatttctagATGCTTGGTTGTGTGCAGTGCAAGATCTCTTCGTGGAGGTGCAAGCATTTT