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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAGgtatatgacacatcccattgtttatcttctttccttatttgctcattcacatgaacctgataaaaccatatacattttttcttgaacaaaaacaatatactattggaacattaaaaaccttataatgtagctatctctttaacctatccagaacttatactcatactgacttgtccatttctttttcag

Basic information

species Zea mays
transcript GRMZM2G006428_T01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211198902|gb|FL376281.1|FL376281
EST:     TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAG                         CTTGAAAGGTTAAGTGACATACAAAGTCAACCCGAGTCACAGCTGAAGTTC
genomic: TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAGgtatatgaca ... tctttttcagCTTGAAAGGTTAAGTGACATACAAAGTCAACCTGAGTCACAGCTGAAGTTC
EST: gi|211292139|gb|FL375498.1|FL375498
EST:     TCGAGGCAAAAGGCACTGGNGGGACCTTCAAAGCCTACAGAACGACAAG                         CTTGAAAGGTTAAGTGACATACAAAGTCAACCTGAGTCACAGCTGAAGTTC
genomic: TCGAGGCAAAAGGCACTGG-GGGACCTTCAAAGCCTACAGAACGACAAGgtatatgaca ... tctttttcagCTTGAAAGGTTAAGTGACATACAAAGTCAACCTGAGTCACAGCTGAAGTTC
EST: gi|22521335|gb|BU080146.1|BU080146
EST:     TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAATGACAAG                         CTTGAAAGGTTAAGTGACATACAAAGTCAACCTGAGTCACAGCTGAAGTTC
genomic: TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAGgtatatgaca ... tctttttcagCTTGAAAGGTTAAGTGACATACAAAGTCAACCTGAGTCACAGCTGAAGTTC
EST: gi|78080365|gb|DV508777.1|DV508777
EST:     TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAG                         CTTGAAAGGTTAAGTGACATACAAAGTCAACCTGAGTCACAGCTGAAGTTC
genomic: TCGAGGCAAAAGGCACTGGGGGACCTTCAAAGCCTACAGAACGACAAGgtatatgaca ... tctttttcagCTTGAAAGGTTAAGTGACATACAAAGTCAACCTGAGTCACAGCTGAAGTTC