1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ATCTCCAAACAAACTTATTGGGTCTGATGTCAGCCCTTCCCCATTCTTTTCTGCCATGGGGGGCGGCATCATGTGCGCAAAAGCGTCAATGCTACTGCAGgtttgtacatgcactcaattttgttccaagctactttaccttgtagtccatttagctgcttgtgttgttacagtactaaatgaacaatcttcatggtagttttccttgcataaaatcgtttttatggtatagttaaccttgccccaatgtacttcttctgatattgtag
species | Zea mays |
transcript | GRMZM2G003509_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGCCATGGGGGGCGGCATCATGTGCGCAAAAGCGTCAATGCTACTGCAG AATGTGCCACCTGCTCTACTTGTGCGATTTTTGAGGGAGCATCGCTCTGAAEST: gi|211510674|gb|FL361528.1|FL361528
genomic: CTGCCATGGGGGGCGGCATCATGTGCGCAAAAGCGTCAATGCTACTGCAGgtttgtacat ... gatattgtagAATGTGCCACCTGCTCTACTTGTGCGATTTTTGAGGGAGCATCGCTCTGAA
EST: CTGCCATGGGGGGCGGCATCATGTGCGCAAAAGCGTCAATGCTACTGCAG AATGTGCCACCTGCTCTACTTGTGCGATTTTTGAGGGAGCATCGCTCTGAAEST: gi|211126699|gb|FL314385.1|FL314385
genomic: CTGCCATGGGGGGCGGCATCATGTGCGCAAAAGCGTCAATGCTACTGCAGgtttgtacat ... gatattgtagAATGTGCCACCTGCTCTACTTGTGCGATTTTTGAGGGAGCATCGCTCTGAA
EST: CTGCCATGGGGGGCGGCATCATGTGCGCAAAAGCGTCAATGCTACTGCAG AATGTGCCACCTGCTCTACTTGTGCGATTTTTGAGGGAGCATCGCTCTGAA
genomic: CTGCCATGGGGGGCGGCATCATGTGCGCAAAAGCGTCAATGCTACTGCAGgtttgtacat ... gatattgtagAATGTGCCACCTGCTCTACTTGTGCGATTTTTGAGGGAGCATCGCTCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTCCAAACAAACTTATTGGGTCTGATGTCAGCCCTTCCCCATTCTTTTCTGCCATGGGGGGCGGCATCATGTGCGCAAAAGCGTCAATGCTACTGCAGgtttgtacatgcactcaattttgttccaagctactttaccttgtagtccatttagctgcttgtgttgttacagtactaaatgaacaatcttcatggtagttttccttgcataaaatcgtttttatggtatagttaaccttgccccaatgtacttcttctgatattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG