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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCATGTACACTGGAAAGGAGCTGCTGAAATTGTTCTTGCCTTGTGCACAAGTTGGCTCAATGTGGATGGCTCAACACATGAAATGACACCTGATAAGgtagaaacactggctccttcaggttcccacttgcctcattcattcctaagtagatttcattctag

Basic information

species Zea mays
transcript GRMZM5G892495_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G892495_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g08010.1 (Oryza sativa), 5'ss of exon 4
TGTTCATGTACACTGGAAAGGAGCTGCTGAAATTGTTCTTGCCTTGTGCACAAGTTGGCTCAATGTGGATGGCTCAACACATGAAATGACACCTGATAAGgtagaaa---cactgg----ctccttcaggttcccacttgcctcattcattcctaagtagatttcattctag
| ||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||||||  ||||  |||||   |  ||||||||||||||||||||||||  ||   ||  ||    |    |||||||     |        ||||  || ||  |  |   ||  ||
TATTCATGTGCACTGGAAAGGGGCTGCTGAAATTGTTCTTGCCTTATGTACAAATTGGCTTGATGTAAATGGCATTAGTCATGAAATGACACCTGATAAGgtattaaccacataggaaacccttctcaggtttat-ttaataattctcatgtctcagctgggtc--tttcag

upper sequence: GRMZM5G892495_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 22
TGTTCATGTACACTGGAAAGGAGCTGCTGAAATTGTTCTTGCCTTGTGCACAAGTTGGCTCAATGTGGATGGCTCAACACATGAAATGACACCTGATAAGgt----agaaacactggctccttcaggttcccacttgcct-cattcattcctaagta-gatttcattctag----------------------------------------------------------------------------
 |||||||| ||||||||||||||| |||||||||| || || |  |||  ||| |   || ||| ||||||            ||||||    || |||||      |||  ||   |  || |  |    |||   ||  |||  |||  |  |  ||||    | | |                                                                            
AGTTCATGTTCACTGGAAAGGAGCTTCTGAAATTGTCCTGGCATCATGCCGAAGCTACATCGATGAGGATGGTAATGTGGCACCAATGACTGACGACAAGgtttgtgaaaagtctaatttattaacctctaaactcagctgtatttgttcgaatctgtgattagcctttgggctgtcatgatgctcagctcactcgattttctttgattttaccctcagctcactcgattttctttgattttaccag