1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTGTCACCATTTCTCAGCCGGTGAATGCTATTGCATTCGTGGCTGATGGGCTCTACTATGGTGTTTCTGACTTTGCCTATGCTGCATATTCCACGgttctgattcataatcctactctgtcgcattattatgtcaacgatactatcacacattatcatgtcatcaattatcacttcaacacaactttgccatcctaatcgtgtcaaatctttgttgtttcag
species | Zea mays |
transcript | GRMZM5G890665_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGGGCTCTACTATGGTGTTTCTGACTTTGCTTATGCTGCATATTCCACG TTTTTTGCGGGAGCGGTCTCATCAATATTCCTACTATTAGCTGCTCCTAATEST: gi|9731973|gb|BE510725.1|BE510725
genomic: ATGGGCTCTACTATGGTGTTTCTGACTTTGCCTATGCTGCATATTCCACGgttctgattc ... gttgtttcagTTTTTTGCGGGAGCGGTCTCATCAATATTCCTACTATTAGCTGCTCCTAAT
EST: ATGGGCTCTACTATGGTGTTTCTGACTTTGCTTATGCTGCATATTCCACG TTTTTTGCGGGAGCGGTCTCATCAATATTCCTACTATTAGCTGCTCCTAATEST: gi|211236851|gb|FL081712.1|FL081712
genomic: ATGGGCTCTACTATGGTGTTTCTGACTTTGCCTATGCTGCATATTCCACGgttctgattc ... gttgtttcagTTTTTTGCGGGAGCGGTCTCATCAATATTCCTACTATTAGCTGCTCCTAAT
EST: CTGACTTTGCTTATGCTGCATATTCCACG TTTTTTGCGGGAGCGGTCTCATCAATATTCCTACTATTAGCTGCTCCTAAT
genomic: CTGACTTTGCCTATGCTGCATATTCCACGgttctgattc ... gttgtttcagTTTTTTGCGGGAGCGGTCTCATCAATATTCCTACTATTAGCTGCTCCTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGTCACCATTTCTCAGCCGGTGAATGCTATTGCATTCGTGGCTGATGGGCTCTACTATGGTGTTTCTGACTTTGCCTATGCTGCATATTCCACGgttctgattcataatcctactctgtcgcattattatgtcaacgatactatcacacattatcatgtcatcaattatcacttcaacacaactttgccatcctaatcgtgtcaaatctttgttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC